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Pre-Implantation Genetic Testing for Aneuploidy on a Semiconductor Based Next-Generation Sequencing Platform
Published on: August 17, 2022
Genetic mutation of familial dilated cardiomyopathy based on next‑generation semiconductor sequencing
Xin-Fu Lin1, Jie-Wei Luo1, Gui Liu2
1Provincial Clinical Medical College, Fujian Medical University, Fuzhou, Fujian 350001, P.R. China.
Insights
Dilated cardiomyopathy (DCM) is often inherited. This study identified a novel LMNA mutation (p.E82K) linked to familial DCM and atrioventricular block, highlighting its significant pathogenic effects.
Area of Science:
- Genetics
- Cardiology
- Molecular Biology
Background:
- Dilated cardiomyopathy (DCM) is a myocardial disease characterized by enlarged cardiac chambers and impaired contractility.
- Genetic factors are increasingly recognized as significant contributors to DCM pathogenesis.
- Familial dilated cardiomyopathy (FDC) necessitates understanding gene-phenotype associations.
Purpose of the Study:
- To investigate the genetic basis of FDC.
- To identify novel mutations associated with FDC through pedigree analysis and whole-exome screening.
- To elucidate the pathogenic mechanisms of identified mutations in FDC.
Main Methods:
- Pedigree analysis and whole-exome sequencing were employed.
- Targeted exon capture and ultra-high multiplex polymerase chain reaction were utilized.
- Sanger DNA sequencing verified potential pathogenic mutations in family members.
Main Results:
- Three rare missense mutations were identified: LMNA p.E82K, KCNQ4 p.F182L, and EYA1 p.G426S.
- The LMNA p.E82K mutation was strongly associated with FDC and atrioventricular block in affected family members.
- A carrier exhibited slight hearing impairment, suggesting potential pleiotropic effects of identified mutations.
Conclusions:
- The LMNA p.E82K mutation is a significant contributor to the pathogenesis of FDC.
- LMNA p.E82K may also play a role in the development of concomitant atrioventricular block.
- This study expands the understanding of genetic causes of DCM and highlights the pathogenic impact of LMNA mutations.
Abstract:
Dilated cardiomyopathy (DCM) is a complex myocardial disease of multifactorial etiologies, including enlarged cardiac chambers and contractile dysfunction. It has been suggested that the inheritance of DCM‑associated mutations predominates its onset. Therefore, the present study investigated the pathogenesis of DCM via pedigree analysis and genetic diagnosis by massive whole‑exome screening, and targeted exon capture. To study the familial gene‑phenotype association, the exon and splice sites of 325 hereditary disease‑associated genes in the proband with familial dilated cardiomyopathy (FDC), including 61 cardiac disease‑associated genes, such as the lamins A/C (LMNA), were analyzed by ultra‑high multiplex polymerase chain reaction and the Ion AmpliSeq™ Inherited Disease Panel. The present study also conducted Sanger DNA Sequencing for family members with global minor allele frequencies <1% to verify potential pathogenic mutation sites. A total of three rare missense mutations were detected, including heterozygous c.244G>A in LMNA, c.546C>G in potassium voltage‑gated channel subfamily KQT (KCNQ4) and c.1276G>A in EYA transcriptional coactivator and phosphatase 1 (EYA1), indicating a glutamic acid to lysine substitution at amino acid 82 (p.E82K) in LMNA, a p.F182L in KCNQ4 (a mutation associated with pathogenic deafness) and p.G426S in EYA1 (associated with Branchiootorenal syndrome 1 and Branchiootic syndrome 1 pathogenesis). In the present study, a carrier with slight hearing impairment was detected in the family analyzed; however, no patients with deafness or branchiootorenal syndrome were observed. LMNA p.E82K revealed SIFT and PolyPhen‑2 scores of 0 and 1, respectively. In the second generation, 3 patients with DCM underwent permanent pacemaker implantation due to sick sinus syndrome, atrioventricular block and unstable cardiac electrophysiology. The present study suggested that LMNA p.E82K may contribute to the pathogenesis of FDC and concomitant atrioventricular block. At present, only three families with DCM resulting from similar mutations have been reported. The present study demonstrated the strong pathogenic effects of LMNA p.E82K on DCM.
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