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PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins
Published on: July 2, 2010
linc-SCRG1 accelerates liver fibrosis by decreasing RNA-binding protein tristetraprolin
Jun-Cheng Wu1, Sheng-Zheng Luo1, Ting Liu1
1Department of Gastroenterology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Abstract:
The biologic roles of long noncoding RNAs (lncRNAs) in liver fibrosis remained unknown. Through microarray analysis, linc-SCRG1 (a lncRNA with transcript length 3118 bp) was found up-regulated 13.62-fold in human cirrhotic tissues. Quantitative PCR verified that linc-SCRG1 increased along with liver fibrosis progression in human tissues and in activated LX2 cells induced by TGF-β1. Knockdown of linc-SCRG1 significantly reversed the effects of TGF-β1 on LX2, including inhibiting activation, promoting apoptosis, reducing proliferation, lessening invasion, and down-regulating genes [fibrosis-related mRNA: α-smooth muscle actin ( α-SMA), type I collagen, and B-cell lymphoma-2; invasion-related mRNA: matrix metallopeptidase-2 ( MMP-2), MMP-9, and MMP-13; inflammation-related mRNA: TNF-α, IL-6, and IL-10]. linc-SCRG1 had binding sites with tristetraprolin (TTP), a kind of RNA-binding protein, and specifically combined to TTP proteins. Overexpression of linc-SCRG1 would cause TTP mRNA unstably and proteins decreasing. TTP mRNA was proved having negative relevance with linc-SCRG1 and was gradually reduced during human liver fibrosis progression. Overexpressing TTP resulted in knockdown of lincSCRG1 and degraded downstream target genes ( MMP-2 and TNF-α) in activated LX2. Overexpressing TTP had the same effects as small interfering RNA-lincSCRG1 (si- lincSCRG1), whereas knockdown of TTP had reversal effects on si- lincSCRG1 in activated LX2. In summary, linc-SCRG1 reduced TTP and restricted its degradation of target genes TNF-α and MMP-2. Therefore, linc-SCRG1 had a repressing TTP-elicited inactivation effect on hepatic stellate cell (HSC) phenotypes. Inhibition of linc-SCRG1 may be a novel therapeutic approach to inactivate HSCs and extenuate human liver fibrosis.-Wu, J.-C., Luo, S.-Z., Liu, T., Lu, L.-G., Xu, M.-Y. linc-SCRG1 accelerates liver fibrosis by decreasing RNA-binding protein tristetraprolin.
Insights
Long noncoding RNA linc-SCRG1 accelerates liver fibrosis by reducing tristetraprolin (TTP). Inhibiting linc-SCRG1 may offer a new therapy for liver fibrosis by inactivating hepatic stellate cells.
Area of Science:
- Molecular Biology
- Cell Biology
- Gastroenterology
Background:
- Long noncoding RNAs (lncRNAs) play crucial roles in various biological processes, but their specific functions in liver fibrosis remain largely unexplored.
- Liver fibrosis is a complex pathological process characterized by excessive accumulation of extracellular matrix in the liver, potentially leading to cirrhosis.
Purpose of the Study:
- To investigate the biological role of the long noncoding RNA linc-SCRG1 in the pathogenesis of human liver fibrosis.
- To elucidate the molecular mechanism by which linc-SCRG1 influences hepatic stellate cell activation and liver fibrosis progression.
Main Methods:
- Microarray analysis and quantitative PCR were used to assess linc-SCRG1 expression in human cirrhotic tissues and activated LX2 cells.
- RNA interference (siRNA) was employed to knockdown linc-SCRG1 and evaluate its effects on LX2 cell activation, apoptosis, proliferation, and invasion.
- RNA-binding protein immunoprecipitation (RIP) and Western blotting were used to investigate the interaction between linc-SCRG1 and tristetraprolin (TTP).
Main Results:
- linc-SCRG1 was significantly upregulated in human cirrhotic tissues and correlated with fibrosis progression.
- Knockdown of linc-SCRG1 reversed TGF-β1-induced activation of LX2 cells, inhibiting proliferation, promoting apoptosis, and reducing invasion.
- linc-SCRG1 directly binds to TTP, leading to decreased TTP mRNA stability and protein levels, thereby promoting liver fibrosis by repressing TTP's inactivation effect on hepatic stellate cells.
Conclusions:
- linc-SCRG1 acts as a pro-fibrotic factor by destabilizing TTP, a key regulator of hepatic stellate cell phenotypes.
- Inhibition of linc-SCRG1 presents a potential therapeutic strategy for treating human liver fibrosis by reactivating TTP-mediated inactivation of hepatic stellate cells.
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