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RNA Interference01:23

RNA Interference

28.1K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
28.1K
RNA Stability01:53

RNA Stability

35.7K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.7K
Alternative RNA Splicing02:18

Alternative RNA Splicing

25.2K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
25.2K
RNA Splicing01:32

RNA Splicing

60.6K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
60.6K
Design Consideration01:22

Design Consideration

580
Designing a structure involves a series of considerations, primarily the material's ultimate strength, calculated through tests that measure changes under increased force until the material reaches its breaking point or limit. The ultimate load, where the material breaks, is divided by its original cross-sectional area, resulting in the ultimate normal stress or strength. The ultimate shearing stress is another significant factor taken into account.
The factor of safety is another key...
580
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

14.9K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
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Related Experiment Video

Updated: Feb 5, 2026

Author Spotlight: Isolating and Analyzing Intestinal Cells of Zebrafish Larvae for Investigating Transcriptomic Aspects of Gastrointestinal Development
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Author Spotlight: Isolating and Analyzing Intestinal Cells of Zebrafish Larvae for Investigating Transcriptomic Aspects of Gastrointestinal Development

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Experimental Considerations for Single-Cell RNA Sequencing Approaches.

Quy H Nguyen1, Nicholas Pervolarakis2, Kevin Nee1

  • 1Department of Biological Chemistry, University of California, Irvine, Irvine, CA, United States.

Frontiers in Cell and Developmental Biology
|September 21, 2018
PubMed
Summary
This summary is machine-generated.

Single-cell RNA sequencing (scRNAseq) reveals cellular differences missed by bulk methods. This guide details scRNAseq workflows, from sample prep to data analysis, addressing key challenges for rare cell type research.

Keywords:
cell isolationcellular heterogeneitycomputational biologysingle-cell analysissingle-cell genomics

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Last Updated: Feb 5, 2026

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Isolation of Adult Spinal Cord Nuclei for Massively Parallel Single-nucleus RNA Sequencing
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Isolation of Adult Spinal Cord Nuclei for Massively Parallel Single-nucleus RNA Sequencing

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Area of Science:

  • Cell Biology
  • Genomics
  • Bioinformatics

Background:

  • Bulk profiling methods mask cellular heterogeneity, limiting understanding of subpopulations like stem cells or tumor-infiltrating immune cells.
  • Single-cell RNA sequencing (scRNAseq) overcomes these limitations, enabling deep interrogation of rare cell types.
  • High sensitivity of scRNAseq necessitates meticulous experimental design and execution to preserve native expression profiles.

Purpose of the Study:

  • To provide a comprehensive guide to single-cell analysis workflows.
  • To highlight critical challenges and considerations at each step of single-cell sequencing.
  • To aid researchers in navigating the complexities of single-cell transcriptomics.

Main Methods:

  • Delineation of a typical single-cell analysis workflow.
  • Discussion of critical challenges in tissue procurement, cell preparation, platform selection, and data analysis.
  • Emphasis on careful cell handling and processing for scRNAseq.

Main Results:

  • Identification of key steps in single-cell analysis.
  • Elucidation of challenges impacting data quality and interpretation.
  • Establishment of best practices for experimental setup and execution.

Conclusions:

  • Single-cell transcriptomics offers unprecedented resolution for studying cellular heterogeneity.
  • Careful experimental design and execution are paramount for meaningful scRNAseq analysis.
  • This guide serves as a valuable resource for researchers entering the field of single-cell sequencing.