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Updated: Feb 5, 2026

Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
Published on: May 15, 2019
UBE2G1 governs the destruction of cereblon neomorphic substrates
Gang Lu1, Stephanie Weng1, Mary Matyskiela1
1Celgene Corporation, San Diego, United States.
Abstract:
The cereblon modulating agents (CMs) including lenalidomide, pomalidomide and CC-220 repurpose the Cul4-RBX1-DDB1-CRBN (CRL4CRBN) E3 ubiquitin ligase complex to induce the degradation of specific neomorphic substrates via polyubiquitination in conjunction with E2 ubiquitin-conjugating enzymes, which have until now remained elusive. Here we show that the ubiquitin-conjugating enzymes UBE2G1 and UBE2D3 cooperatively promote the K48-linked polyubiquitination of CRL4CRBN neomorphic substrates via a sequential ubiquitination mechanism. Blockade of UBE2G1 diminishes the ubiquitination and degradation of neomorphic substrates, and consequent antitumor activities elicited by all tested CMs. For example, UBE2G1 inactivation significantly attenuated the degradation of myeloma survival factors IKZF1 and IKZF3 induced by lenalidomide and pomalidomide, hence conferring drug resistance. UBE2G1-deficient myeloma cells, however, remained sensitive to a more potent IKZF1/3 degrader CC-220. Collectively, it will be of fundamental interest to explore if loss of UBE2G1 activity is linked to clinical resistance to drugs that hijack the CRL4CRBN to eliminate disease-driving proteins.
Insights
The ubiquitin-conjugating enzymes UBE2G1 and UBE2D3 are crucial for cereblon modulating agents (CMs) to degrade neomorphic substrates. UBE2G1 blockade diminishes CM efficacy and can cause drug resistance in cancer therapy.
Area of Science:
- Molecular Biology
- Cancer Biology
- Pharmacology
Background:
- Cereblon modulating agents (CMs) like lenalidomide repurpose the CRL4CRBN E3 ubiquitin ligase complex.
- CMs induce degradation of specific neomorphic substrates via polyubiquitination, but the E2 ubiquitin-conjugating enzymes involved were unknown.
Purpose of the Study:
- To identify the E2 ubiquitin-conjugating enzymes responsible for CRL4CRBN substrate polyubiquitination.
- To investigate the role of these enzymes in CM-induced substrate degradation and antitumor activity.
Main Methods:
- Investigated the cooperative function of UBE2G1 and UBE2D3 in K48-linked polyubiquitination of CRL4CRBN substrates.
- Assessed the impact of UBE2G1 blockade on substrate ubiquitination, degradation, and CM-induced antitumor effects.
- Examined drug resistance mechanisms in UBE2G1-deficient myeloma cells.
Main Results:
- UBE2G1 and UBE2D3 cooperatively promote K48-linked polyubiquitination of CRL4CRBN substrates through a sequential mechanism.
- Blocking UBE2G1 significantly reduced substrate ubiquitination and degradation, diminishing the antitumor activity of tested CMs.
- UBE2G1 inactivation conferred resistance to lenalidomide and pomalidomide by preventing IKZF1/IKZF3 degradation, but not to the more potent CC-220.
Conclusions:
- UBE2G1 is a key E2 enzyme in the CRL4CRBN E3 ligase complex for CM-induced neomorphic substrate degradation.
- Loss of UBE2G1 activity can lead to clinical resistance to certain CMs, highlighting its importance in therapeutic efficacy.
- Further research is warranted to explore the link between UBE2G1 activity and clinical resistance to CRL4CRBN-hijacking drugs.
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