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Density functional tight binding-based free energy simulations in the DFTB+ program.

Izaac Mitchell1, Bálint Aradi2, Alister J Page1

  • 1School of Environmental and Life Sciences, University of Newcastle.

Journal of Computational Chemistry
|September 22, 2018
PubMed
Summary
This summary is machine-generated.

A new interface links DFTB+ and PLUMED for enhanced molecular dynamics simulations. This tool accurately calculates free energy barriers for rare chemical events, overcoming simulation timescale limitations.

Keywords:
corannulenedensity functional tight bindinggraphene oxidemetadynamicsproton transfer

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Area of Science:

  • Computational Chemistry
  • Materials Science
  • Chemical Physics

Background:

  • Reactive molecular dynamics (MD) simulations face timescale limitations due to high free energy barriers trapping simulations in local energy wells.
  • Density functional tight binding (DFTB) is a common potential for these simulations, but its application in free energy calculations is restricted.

Purpose of the Study:

  • To develop and validate a new interface between the DFTB+ software package and the PLUMED library.
  • To enable accurate free energy calculations for reactive MD simulations using DFTB.

Main Methods:

  • Developed a DFTB+ and PLUMED interface for free energy calculations.
  • Employed third-order DFTB with metadynamics (including multiple walkers) and well-tempered metadynamics.
  • Tested the interface on three archetypal rare-event chemical reactions: proton transfer in malonaldehyde, bowl inversion in corannulene, and oxygen diffusion on graphene.

Main Results:

  • Successfully calculated free energies of activation (ΔG‡) for the studied reactions: 13.1 ± 0.4 kJ mol⁻¹ (malonaldehyde), 48.2 ± 1.7 kJ mol⁻¹ (corannulene), and 52.0 ± 6.2 kJ mol⁻¹ (graphene).
  • Obtained DFTB free energy barriers and local minima that favorably compare with existing literature values.
  • Demonstrated the effectiveness of the DFTB+ - PLUMED interface for rare-event simulations.

Conclusions:

  • The developed DFTB+ - PLUMED interface effectively overcomes the timescale problem in reactive MD simulations.
  • This interface provides a robust tool for accurate free energy calculations in chemical systems.
  • The results highlight the utility of the interface for studying complex chemical reactions and material processes.