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Updated: Feb 5, 2026

Intrathecal Delivery of Antisense Oligonucleotides in the Rat Central Nervous System
Published on: October 29, 2019
COPII vesicles can affect the activity of antisense oligonucleotides by facilitating the release of oligonucleotides
Xue-Hai Liang1, Hong Sun1, Joshua G Nichols1
1Core Antisense Research, Ionis Pharmaceuticals, Inc. 2855 Gazelle Court, Carlsbad, CA 92010, USA.
Abstract:
RNase H1-dependent, phosphorothioate-modified antisense oligonucleotides (PS-ASOs) can enter cells through endocytic pathways and need to be released from the membrane-enclosed organelles, a limiting step for antisense activity. Accumulating evidence has suggested that productive PS-ASO release mainly occurs from late endosomes (LEs). However, how PS-ASOs escape from LEs is not well understood. Here, we report that upon PS-ASO incubation, COPII vesicles, normally involved in ER-Golgi transport, can re-locate to PS-ASO-containing LEs. Reduction of COPII coat proteins significantly decreased PS-ASO activity, without affecting the levels of PS-ASO uptake and early-to-late endosome transport, but caused slower PS-ASO release from LEs. COPII co-localization with PS-ASOs at LEs does not require de novo assembly of COPII at ER. Interestingly, reduction of STX5 and P115, proteins involved in tethering and fusion of COPII vesicles with Golgi membranes, impaired COPII re-localization to LEs and decreased PS-ASO activity. STX5 can re-locate to LEs upon PS-ASO incubation, can bind PS-ASOs, and the binding appears to be required for this pathway. Our study reveals a novel release pathway in which PS-ASO incubation causes LE re-localization of STX5, which mediates the recruitment of COPII vesicles to LEs to facilitate endosomal PS-ASO release, and identifies another key PS-ASO binding protein.
Insights
Phosphorothioate antisense oligonucleotides (PS-ASOs) require release from late endosomes for activity. This study reveals COPII vesicles and STX5 protein mediate PS-ASO escape from late endosomes, a novel cellular release pathway.
Area of Science:
- Cell Biology
- Molecular Biology
- Drug Delivery
Background:
- Phosphorothioate antisense oligonucleotides (PS-ASOs) are used to modulate gene expression.
- PS-ASOs enter cells via endocytosis and must escape endosomes for therapeutic activity.
- Release from late endosomes (LEs) is a critical, yet poorly understood, step for PS-ASO efficacy.
Purpose of the Study:
- To elucidate the mechanism by which PS-ASOs are released from late endosomes.
- To identify cellular components involved in PS-ASO endosomal escape.
- To understand the role of COPII vesicles and associated proteins in PS-ASO release.
Main Methods:
- Cellular assays to monitor PS-ASO uptake and localization.
- Knockdown of COPII coat proteins and associated factors (STX5, P115).
- Confocal microscopy to assess co-localization of PS-ASOs with endosomal markers and COPII vesicles.
Main Results:
- COPII vesicles, typically involved in ER-Golgi transport, re-localized to PS-ASO-containing LEs.
- Reduction of COPII proteins decreased PS-ASO activity and slowed endosomal release, without affecting uptake.
- STX5 protein re-localized to LEs, bound PS-ASOs, and was crucial for COPII recruitment and PS-ASO release.
Conclusions:
- PS-ASO incubation triggers a novel pathway involving STX5-mediated recruitment of COPII vesicles to LEs.
- This pathway facilitates the release of PS-ASOs from endosomes, enhancing their antisense activity.
- STX5 is identified as a key protein binding PS-ASOs and mediating their escape from LEs.
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