Related Experiment Video
Updated: Feb 5, 2026

11:42
Iterative Optimization of DNA Duplexes for Crystallization of SeqA-DNA Complexes
Published on: November 1, 2012
10.4K
Modulating Self-Assembly of DNA Crystals with Rationally Designed Agents
Jiemin Zhao1, Yue Zhao2, Zhe Li1
1Department of Chemistry, Purdue University, West Lafayette, IN, 47907, USA.
Angewandte Chemie (International Ed. in English)
|September 22, 2018
Summary
Researchers developed a novel agent to control DNA crystal growth, yielding larger, higher-quality crystals for structural biology. This method enhances biomacromolecule crystallization, aiding in determining complex 3D structures.
Area of Science:
- Biochemistry
- Structural Biology
- Materials Science
Background:
- High-quality biomacromolecule crystal growth is essential for 3D structure determination.
- Current crystallization methods often face challenges in producing large, high-quality crystals.
- Understanding and controlling crystallization kinetics is crucial for structural biologists.
Purpose of the Study:
- To report a strategy for controlling crystallization kinetics.
- To improve the quality of engineered self-assembled 3D DNA crystals.
- To introduce a rationally designed agent for modulating the crystallization process.
Main Methods:
- Development of a rationally designed modulating agent.
- Application of the agent to control DNA crystallization.
- Analysis of crystal size, quality, and diffraction patterns.
Main Results:
- Fewer, but larger, DNA crystals were produced with the modulating agent.
- Crystals exhibited modestly higher resolution diffraction patterns.
- The improvement was attributed to reduced nucleation and slower crystal growth rates.
Conclusions:
- The developed strategy effectively controls DNA crystallization kinetics and enhances crystal quality.
- This approach leads to improved diffraction data for structural analysis.
- The strategy is potentially applicable to the crystallization of other biomacromolecules.
Related Concept Videos
Rationalizing Substitutions
60
Integrals involving non-rational functions are often difficult to evaluate using standard techniques, especially when radicals appear in the integrand. Rationalizing substitution provides a systematic method for simplifying such integrals by converting them into rational forms that are easier to handle.Consider a rod whose linear mass density depends on a constant linear density, a characteristic length, and the distance from the left end of the rod. Determining the total mass requires...
60
Rational Expressions
401
Rational expressions are algebraic fractions in which both the numerator and the denominator are polynomials. These expressions follow the arithmetic rules of numerical fractions but require extra care due to the presence of variables. A fundamental part of working with rational expressions is identifying values that make the expression undefined, typically those that result in division by zero or undefined radicals.Determining the DomainThe domain of a rational expression includes all real...
401
Asymptotes in Rational Functions
254
A rational function is defined as the quotient of two polynomials: where Q(x)≠0, These functions often exhibit asymptotes, which are the lines that the graph approaches but never touches. These asymptotes are classified based on how the function behaves near specific values of the input.Vertical asymptotes occur where the denominator is zero, and the numerator is not, causing the function to be undefined. These are found by solving Q(x)=0. For example: has a vertical...
254
Ionic Crystal Structures
17.1K
Ionic crystals consist of two or more different kinds of ions that usually have different sizes. The packing of these ions into a crystal structure is more complex than the packing of metal atoms that are the same size.
Most monatomic ions behave as charged spheres, and their attraction for ions of opposite charge is the same in every direction. Consequently, stable structures for ionic compounds result (1) when ions of one charge are surrounded by as many ions as possible of the opposite...
Most monatomic ions behave as charged spheres, and their attraction for ions of opposite charge is the same in every direction. Consequently, stable structures for ionic compounds result (1) when ions of one charge are surrounded by as many ions as possible of the opposite...
17.1K
Crystal Growth: Principles of Crystallization
5.0K
Crystallization is a phase transformation process in which crystals are precipitated from a supersaturated solution or formed from other sources. During crystallization, atoms or molecules arrange themselves into a well-defined, rigid crystal lattice to minimize energy.
Initiating crystallization involves manipulating the concentration of the solute and the temperature of the solution. Since crystal growth occurs when the ratio of concentration and solubility of the solute in the solvent...
Initiating crystallization involves manipulating the concentration of the solute and the temperature of the solution. Since crystal growth occurs when the ratio of concentration and solubility of the solute in the solvent...
5.0K
Rational Emotive Behavior Therapy
448
Cognitive-behavioral therapies (CBTs) are grounded in the belief that our thoughts profoundly influence our emotions and actions. Advocates of CBT emphasize three core assumptions: first, that cognitions are identifiable and measurable; second, that they are central to psychological functioning; and third, that irrational or maladaptive beliefs can be replaced with rational and adaptive ones. This transformative approach to therapy has paved the way for specific models such as Albert...
448

