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Updated: Feb 4, 2026

Use of Viral Entry Assays and Molecular Docking Analysis for the Identification of Antiviral Candidates against Coxsackievirus A16
Published on: July 15, 2019
Small molecules targeting coxsackievirus A16 capsid inactivate viral particles and prevent viral binding
Chien-Ju Lin1, Ching-Hsuan Liu2,3, Jonathan Y Wang4
1School of Pharmacy, College of Pharmacy, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan.
Insights
Chebulagic acid and punicalagin disrupt Coxsackievirus A16 infection by blocking viral entry. These natural tannins show promise as antiviral candidates for hand, foot, and mouth disease.
Area of Science:
- Virology
- Natural Product Chemistry
- Drug Discovery
Background:
- Coxsackievirus A16 (CVA16) causes hand, foot, and mouth disease (HFMD) in children, with potential for severe outcomes.
- Current lack of specific antivirals and vaccines necessitates novel therapeutic strategies against CVA16.
Purpose of the Study:
- To identify small molecules that inhibit CVA16 infection.
- To investigate the antiviral potential of tannins against CVA16.
Main Methods:
- Screening of natural compounds for CVA16 antiviral activity.
- Cell-based assays to assess viral infectivity and cytotoxicity.
- Molecular docking to predict binding interactions with the CVA16 capsid.
Main Results:
- Chebulagic acid (CHLA) and punicalagin (PUG) significantly reduced CVA16 infectivity at micromolar concentrations.
- CHLA and PUG demonstrated no apparent cytotoxicity in human rhabdomyosarcoma cells.
- Mechanistic studies indicated inhibition of viral entry, including particle inactivation and binding inhibition.
- Molecular docking identified the viral capsid's fivefold axis canyon as a target region.
Conclusions:
- CHLA and PUG are effective antagonists of CVA16 entry.
- These tannins represent promising candidates for developing new treatments against CVA16 infections.
Abstract:
Coxsackievirus A16 (CVA16) is an etiologic agent of hand, foot, and mouth disease (HFMD) that affects young children, and although typically self-limited, severe complications, and fatal cases have been reported. Due to the lack of specific medication and vaccines against CVA16, there is currently a need to develop effective antivirals to better control CVA16 infections in epidemic areas. In this study, we identified the tannins chebulagic acid (CHLA) and punicalagin (PUG) as small molecules that can efficiently disrupt the CVA16 infection of human rhabdomyosarcoma cells. Both compounds significantly reduced CVA16 infectivity at micromolar concentrations without apparent cytotoxicity. A mechanistic analysis revealed that the tannins particularly targeted the CVA16 entry phase by inactivating cell-free viral particles and inhibiting viral binding. Further examination by molecular docking analysis pinpointed the targets of the tannins in the fivefold axis canyon region of the CVA16 capsid near the pocket entrance that functions in cell surface receptor binding. We suggest that CHLA and PUG are efficient antagonists of CVA16 entry and could be of value as antiviral candidates or as starting points for developing molecules to treat CVA16 infections.
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