Related Experiment Video
Updated: Feb 4, 2026

Generating Transgenic Plants with Single-copy Insertions Using BIBAC-GW Binary Vector
Published on: March 28, 2018
Mediation analysis for common binary outcomes
Sheila M Gaynor1, Joel Schwartz2,3, Xihong Lin1,4
1Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts.
Abstract:
Mediation analysis provides an attractive causal inference framework to decompose the total effect of an exposure on an outcome into natural direct effects and natural indirect effects acting through a mediator. For binary outcomes, mediation analysis methods have been developed using logistic regression when the binary outcome is rare. These methods will not hold in practice when a disease is common. In this paper, we develop mediation analysis methods that relax the rare disease assumption when using logistic regression. We calculate the natural direct and indirect effects for common diseases by exploiting the relationship between logit and probit models. Specifically, we derive closed-form expressions for the natural direct and indirect effects on the odds ratio scale. Mediation models for both continuous and binary mediators are considered. We demonstrate through simulation that the proposed method performs well for common binary outcomes. We apply the proposed methods to analyze the Normative Aging Study to identify DNA methylation sites that are mediators of smoking behavior on the outcome of obstructed airway function.
Insights
This study introduces new mediation analysis methods for common diseases, improving causal inference for binary outcomes. The approach relaxes the rare disease assumption in logistic regression, offering more accurate natural direct and indirect effects.
Area of Science:
- Epidemiology
- Biostatistics
- Causal Inference
Background:
- Mediation analysis decomposes exposure effects into direct and indirect pathways.
- Existing logistic regression methods for mediation analysis assume rare binary outcomes, limiting their application to common diseases.
- Accurate causal inference is crucial for understanding disease mechanisms and developing targeted interventions.
Purpose of the Study:
- To develop novel mediation analysis methods applicable to common binary outcomes, relaxing the rare disease assumption.
- To provide closed-form expressions for natural direct and indirect effects on the odds ratio scale.
- To extend mediation analysis to models with both continuous and binary mediators.
Main Methods:
- Exploited the relationship between logit and probit models to extend mediation analysis for common binary outcomes.
- Derived closed-form expressions for natural direct and indirect effects on the odds ratio scale.
- Evaluated method performance through simulations and applied it to a real-world epidemiological study.
Main Results:
- The proposed method demonstrates good performance for common binary outcomes in simulations.
- The methods successfully identified potential DNA methylation mediators of smoking behavior on obstructed airway function in the Normative Aging Study.
- Closed-form expressions provide a computationally efficient way to estimate effects.
Conclusions:
- The developed mediation analysis methods effectively address the limitations of previous approaches for common binary outcomes.
- This work enhances causal inference capabilities in epidemiology, particularly for prevalent diseases.
- The application to the Normative Aging Study highlights the utility of these methods in identifying disease pathways.
Related Concept Videos
Binary Fission
Binary Fission
Common Ion Effect
Predicting Reaction Outcomes
Outcomes of Glycolysis
Cellular respiration can occur aerobically (with oxygen) or anaerobically (without oxygen). In the presence of oxygen, cellular respiration starts with glycolysis and continues with pyruvate...
Guidelines for Writing Outcome
Patient outcomes reflect the patient's response to the goal rather than what the nurse aims to achieve. Terminology should be observable and measurable to avoid the reader's interpretation. The desired outcome should be realistic and achievable in the designated care timeframe. Expected outcomes should align with adjunctive therapies. The outcome should enhance care...

