Related Experiment Video
Updated: Feb 4, 2026

A Semantic Priming Event-related Potential ERP Task to Study Lexico-semantic and Visuo-semantic Processing in Autism Spectrum Disorder
Published on: April 12, 2018
SemGen: a tool for semantics-based annotation and composition of biosimulation models
Maxwell L Neal1, Christopher T Thompson2, Karam G Kim3
1Seattle Children's Research Institute, Center for Global Infectious Disease Research, Seattle, WA, USA.
Summary:
As the number and complexity of biosimulation models grows, so do demands for tools that can help users understand models and compose more comprehensive and accurate systems from existing models. SemGen is a tool for semantics-based annotation and composition of biosimulation models designed to address this demand. A key SemGen capability is to decompose and then integrate models across existing model exchange formats including SBML and CellML. To support this capability, we use semantic annotations to explicitly capture the underlying biological and physical meanings of the entities and processes that are modeled. SemGen leverages annotations to expose a model's biological and computational architecture and to help automate model composition.
Availability And Implementation:
SemGen is freely available at https://github.com/SemBioProcess/SemGen.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
More Related Videos
Related Concept Videos
Genome Annotation and Assembly
Solution Composition During Acid/Base Titrations
The α0 and α1 values...
Classifying Matter by Composition
According to its composition, the matter can be classified into two broad categories — pure substances and mixtures.
A pure substance is a form of matter that has a constant composition throughout with uniform properties. For example, any sample of sucrose has the same composition and same physical properties, such as melting point, color, and sweetness, regardless of the source from which it is isolated.
A mixture is composed of two or...
Composite Bodies
Composite bodies have widespread applications in mechanical engineering, from automobiles to aircraft to rockets. For example, an automobile wheel comprises...
Composition of Blood
Formed elements constitute the remaining 45% of the blood volume. These...
Composition of Body Fluids

