Related Experiment Video
Updated: Feb 4, 2026

Identifying Caspases and their Motifs that Cleave Proteins During Influenza A Virus Infection
Published on: July 21, 2022
The Cellular DExD/H-Box RNA Helicase UAP56 Co-localizes With the Influenza A Virus NS1 Protein
Shiho Chiba1, Lindsay Hill-Batorski1, Gabriele Neumann1
1Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, United States.
Abstract:
UAP56, a member of the DExD/H-box RNA helicase family, is essential for pre-mRNA splicing and mRNA export in eukaryotic cells. In influenza A virus-infected cells, UAP56 mediates viral mRNA nuclear export, facilitates viral ribonucleoprotein complex formation through direct interaction with the viral nucleoprotein, and may indirectly affect antiviral host responses by binding to and/or facilitating the activation of the antiviral host factors MxA and PKR. Here, we demonstrate that UAP56 also co-localizes with the influenza A viral NS1 protein, which counteracts host cell innate immune responses stimulated by virus infection. The UAP56-NS1 association relies on the RNA-binding residues R38 and K41 in NS1 and may be mediated by single-stranded RNA. UAP56 association with NS1 does not affect the NS1-mediated downregulation of cellular innate immune pathways in reporter gene assays, leaving in question the exact biological role and relevance of the UAP56-NS1 association.
Insights
The RNA helicase UAP56 interacts with influenza A virus NS1 protein, which suppresses host immunity. This interaction does not impact NS1
Area of Science:
- Virology
- Molecular Biology
- Immunology
Background:
- UAP56 (RNA helicase) is crucial for pre-mRNA splicing and mRNA export.
- In influenza A virus infection, UAP56 aids viral mRNA export and nucleoprotein complex formation.
- UAP56 may influence antiviral host responses by interacting with MxA and PKR.
Purpose of the Study:
- To investigate the interaction between UAP56 and influenza A virus NS1 protein.
- To determine the functional relevance of the UAP56-NS1 association in the context of host innate immune responses.
Main Methods:
- Co-localization studies to assess UAP56 and NS1 proximity in infected cells.
- Analysis of UAP56-NS1 binding domains using specific mutations in NS1.
- Reporter gene assays to evaluate the impact of UAP56-NS1 interaction on NS1-mediated immune suppression.
Main Results:
- UAP56 co-localizes with influenza A virus NS1 protein.
- The UAP56-NS1 association depends on RNA-binding residues R38 and K41 in NS1 and may involve single-stranded RNA.
- UAP56 binding to NS1 did not alter NS1's ability to downregulate innate immune pathways in reporter assays.
Conclusions:
- UAP56 interacts with influenza A virus NS1 protein, potentially via RNA.
- The biological significance of the UAP56-NS1 interaction remains unclear as it does not affect NS1's immune evasion function.
Related Concept Videos
DNA Helicases
Viruses with RNA Genomes
RNA Polymerase II Accessory Proteins
RNA Polymerase II Accessory Proteins
What are Viruses?
Eukaryotic RNA Polymerases
All three eukaryotic RNAPs require specific transcription factors, of which the...

