Related Experiment Video
Updated: Feb 4, 2026

Parallel High Throughput Single Molecule Kinetic Assay for Site-Specific DNA Cleavage
Published on: May 6, 2020
Nucleotide specificity of DNA cleavage by esperamycin/calichemicin antitumor antibiotics
Y Sugiura1, Y Takahashi, Y Uesawa
1Institute for Chemical Research, Kyoto University, Kyoto, Japan.
Abstract:
Esperamycin shows potent DNA cleavage activity in the presence of sulfhydryl-containing compounds such as glutathione and dithiothreitol. In the esperamycin-mediated DNA degradation, deoxythymidylic and deoxycytidylic acid residues at oligopyrimidine regions of 5'-CTC, TTC, and TTT sequences are preferred cleavage sites. The DNA binding of a typical A-T specific minor groove binder, netropsin or distamycin A, strongly inhibits the DNA cuttings at 5'-TTC, TTT, and AAA sequences.
Related Concept Videos
Nucleotide Excision Repair
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Cleavage and Blastulation
Overview of DNA Repair
Chemically...
Antibiotic Selection
From DNA to Protein

