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Updated: Feb 4, 2026

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
Investigating the relationship between proteomic, compositional, and histologic biomarkers and cartilage biomechanics
Joe T Rexwinkle1, Nicole C Werner2, Aaron M Stoker2
1Mechanical Engineering, University of Missouri, Columbia, MO, USA.
Abstract:
A thorough understanding of the relationship between the biological and mechanical functions of articular cartilage is necessary to develop diagnostics and treatments for arthritic diseases. A key step in developing this understanding is the establishment of models which utilize large numbers of biomarkers to create comprehensive models of the interplay between cartilage biology and biomechanics, which will more accurately demonstrate the complex etiology and progression of tissue adaptation and degradation. It is the goal of this study to demonstrate the ability of artificial neural networks (ANNs) to utilize biomarkers to create predictive models of articular cartilage biomechanics, which will provide a basis for more sophisticated research in the future. Osteochondral plugs were collected from patients undergoing total knee arthroplasty, cultured, then analyzed to collect proteomic, compositional, and histologic biomarker data. Samples were subjected to stress relaxation testing as well as computational simulations using finite element analysis (FEA) modeling and optimization to determine key mechanical properties. The acquired data was fed into an ANN to generate a model which predicts the biomechanical properties of cartilage from given biomarkers. Using all significant inputs, the developed neural network predicted the ground substance modulus with a moderate degree of accuracy, but had difficulty predicting the collagen fiber modulus and cartilage permeability. Using only clinically attainable biomarkers, the best-performing model produced comparably accurate and more consistent predictions of all three mechanical properties. These models demonstrate the potential for ANNs to be included in clinical studies of articular cartilage.
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