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Published on: February 8, 2020
VSTM2A Overexpression Is a Sensitive and Specific Biomarker for Mucinous Tubular and Spindle Cell Carcinoma (MTSCC)
Lisha Wang1,2, Yuping Zhang1,2, Ying-Bei Chen3
1Michigan Center for Translational Pathology.
Abstract:
Our recent study revealed recurrent chromosomal losses and somatic mutations of genes in the Hippo pathway in mucinous tubular and spindle cell carcinoma (MTSCC). Here, we performed an integrative analysis of 907 renal cell carcinoma (RCC) samples (combined from The Cancer Genome Atlas and in-house studies) and the Knepper data set of microdissected rat nephrons. We identified VSTM2A and IRX5 as novel cancer-specific and lineage-specific biomarkers in MTSCC. We then assessed their expression by RNA in situ hybridization (ISH) in 113 tumors, including 33 MTSCC, 40 type 1 papillary RCC, 8 type 2 papillary RCC, 2 unclassified RCC, 15 clear cell RCC, and 15 chromophobe RCC. Sensitivity and specificity were calculated as the area under the receiver operating characteristics curve (AUC). All MTSCC tumors demonstrated moderate to high expression of VSTM2A (mean ISH score=255). VSTM2A gene expression assessed by RNA sequencing strongly correlated with VSTM2A ISH score (r(2)=0.81, P=0.00016). The majority of non-MTSCC tumors demonstrated negative or low expression of VSTM2A. IRX5, nominated as a lineage-specific biomarker, showed moderate to high expression in MTSCC tumors (mean ISH score=140). IRX5 gene expression assessed by RNA sequencing strongly correlated with IRX5 ISH score (r(2)=0.69, P=0.00291). VSTM2A (AUC: 99.2%) demonstrated better diagnostic efficacy than IRX5 (AUC: 87.5%), and may thus serve as a potential diagnostic marker to distinguish tumors with overlapping histology. Furthermore, our results suggest MTSCC displays an overlapping phenotypic expression pattern with the loop of Henle region of normal nephrons.
Insights
Researchers identified VSTM2A and IRX5 as novel biomarkers for mucinous tubular and spindle cell carcinoma (MTSCC). VSTM2A showed high diagnostic accuracy, distinguishing MTSCC from other renal cell carcinomas (RCCs).
Area of Science:
- Oncology
- Genomics
- Biomarker Discovery
Background:
- Mucinous tubular and spindle cell carcinoma (MTSCC) is a subtype of renal cell carcinoma (RCC).
- Previous studies indicated genetic alterations in the Hippo pathway in MTSCC.
- Accurate diagnosis of MTSCC can be challenging due to overlapping histology with other RCC subtypes.
Purpose of the Study:
- To identify novel cancer-specific and lineage-specific biomarkers for MTSCC.
- To evaluate the diagnostic efficacy of potential biomarkers in distinguishing MTSCC from other RCCs.
- To explore the phenotypic expression patterns of MTSCC in relation to normal nephron structures.
Main Methods:
- Integrative analysis of 907 renal cell carcinoma (RCC) samples and rat nephron data.
- Identification of VSTM2A and IRX5 as potential biomarkers.
- Assessment of VSTM2A and IRX5 expression using RNA in situ hybridization (ISH) in 113 tumors.
- Correlation analysis between RNA sequencing and ISH gene expression data.
- Calculation of diagnostic accuracy using Area Under the Receiver Operating Characteristics Curve (AUC).
Main Results:
- VSTM2A and IRX5 were identified as novel cancer-specific and lineage-specific biomarkers for MTSCC.
- All MTSCC tumors exhibited moderate to high VSTM2A expression (mean ISH score=255), with strong correlation to RNA sequencing data (r²=0.81).
- Non-MTSCC tumors generally showed negative or low VSTM2A expression.
- IRX5 also showed moderate to high expression in MTSCC (mean ISH score=140), correlating with RNA sequencing data (r²=0.69).
- VSTM2A demonstrated superior diagnostic efficacy (AUC: 99.2%) compared to IRX5 (AUC: 87.5%) in distinguishing MTSCC.
Conclusions:
- VSTM2A is a highly effective diagnostic marker for distinguishing MTSCC from other renal cell carcinomas, even those with overlapping histology.
- IRX5 also shows promise as a lineage-specific biomarker for MTSCC.
- The findings suggest that MTSCC shares phenotypic expression patterns with the loop of Henle region of normal nephrons.
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