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Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER
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Novel causative variants in patients with achromatopsia
Ehab Abdelkader1,2, Oliver Brandau3, Carsten Bergmann3
1a Ophthalmology Department , Royal Alexandra Hospital , Paisley , UK.
Ophthalmic Genetics
|October 6, 2018
Summary
Five new genetic variants were identified in achromatopsia (ACHM) patients. These discoveries expand ACHM genotypes and aid in developing future therapies for this inherited retinal disease.
Area of Science:
- Ophthalmology
- Genetics
- Molecular Biology
Background:
- Achromatopsia (ACHM) is a rare, inherited retinal disorder characterized by reduced visual acuity, photophobia, and complete or partial absence of color vision.
- Genetic defects in genes such as CNGA3 and PDE6C are known causes of ACHM.
- Identifying novel genetic variants is crucial for understanding ACHM pathogenesis and developing targeted therapies.
Observation:
- This study investigated seven unrelated consanguineous families with ACHM.
- Multimodal retinal imaging and full-field electroretinography (ffERG) were performed on patients.
- Next-generation sequencing (NGS) was utilized for genetic analysis.
Findings:
- Three novel homozygous variants in CNGA3 (c.967G>C, c.101+1G>A, c.395+1G>T) and two novel homozygous variants in PDE6C (c.1899C>A, c.1072-1G>C) were identified.
- Mutation segregation was confirmed in three of the seven families.
- Patients exhibited nonrecordable ffERG 30-Hz flicker responses, diminished cone function, preserved rod function, and variable foveal abnormalities.
Implications:
- The identified novel variants expand the known spectrum of genetic causes for achromatopsia.
- This research provides valuable genotype information for ACHM patients.
- These findings may contribute to the development of future gene-specific therapies for achromatopsia.
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