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Detecting Somatic Genetic Alterations in Tumor Specimens by Exon Capture and Massively Parallel Sequencing
Published on: October 18, 2013
Genetic Alterations of TRAF Proteins in Human Cancers
Sining Zhu1,2, Juan Jin1,3, Samantha Gokhale1,2
1Department of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Abstract:
The tumor necrosis factor receptor (TNF-R)-associated factor (TRAF) family of cytoplasmic adaptor proteins regulate the signal transduction pathways of a variety of receptors, including the TNF-R superfamily, Toll-like receptors (TLRs), NOD-like receptors (NLRs), RIG-I-like receptors (RLRs), and cytokine receptors. TRAF-dependent signaling pathways participate in a diverse array of important cellular processes, including the survival, proliferation, differentiation, and activation of different cell types. Many of these TRAF-dependent signaling pathways have been implicated in cancer pathogenesis. Here we analyze the current evidence of genetic alterations of TRAF molecules available from The Cancer Genome Atlas (TCGA) and the Catalog of Somatic Mutations in Cancer (COSMIC) as well as the published literature, including copy number variations and mutation landscape of TRAFs in various human cancers. Such analyses reveal that both gain- and loss-of-function genetic alterations of different TRAF proteins are commonly present in a number of human cancers. These include pancreatic cancer, meningioma, breast cancer, prostate cancer, lung cancer, liver cancer, head and neck cancer, stomach cancer, colon cancer, bladder cancer, uterine cancer, melanoma, sarcoma, and B cell malignancies, among others. Furthermore, we summarize the key in vivo and in vitro evidence that demonstrates the causal roles of genetic alterations of TRAF proteins in tumorigenesis within different cell types and organs. Taken together, the information presented in this review provides a rationale for the development of therapeutic strategies to manipulate TRAF proteins or TRAF-dependent signaling pathways in different human cancers by precision medicine.
Insights
Tumor necrosis factor receptor (TNF-R)-associated factors (TRAFs) are crucial in cell signaling and cancer. Genetic alterations in TRAF proteins are common in many cancers, suggesting therapeutic potential.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Tumor necrosis factor receptor (TNF-R)-associated factors (TRAFs) are cytoplasmic adaptor proteins regulating diverse receptor signaling pathways.
- TRAF-dependent pathways are vital for cellular processes like survival and proliferation, and are implicated in cancer development.
Purpose of the Study:
- To analyze genetic alterations of TRAF molecules in human cancers using TCGA, COSMIC, and literature data.
- To summarize evidence on the role of TRAF genetic alterations in tumorigenesis.
Main Methods:
- Analysis of genetic alterations (copy number variations, mutations) of TRAF genes from TCGA and COSMIC databases.
- Review of published in vivo and in vitro studies on TRAF function in cancer.
Main Results:
- Gain- and loss-of-function genetic alterations in TRAF proteins are frequently observed in various cancers, including pancreatic, breast, lung, and liver cancers.
- Evidence supports causal roles for TRAF genetic alterations in tumorigenesis across different tissues.
Conclusions:
- Genetic alterations of TRAF proteins are common in human cancers.
- These findings provide a basis for developing precision medicine strategies targeting TRAF pathways in cancer therapy.
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