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Updated: Feb 4, 2026

Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers
Published on: September 19, 2022
NF-YA enters cells through cell penetrating peptides
Debora Libetti1, Andrea Bernardini1, Maria Luisa Chiaramonte1
1Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milano, Italy.
The NF-YA protein subunit contains cell-penetrating peptides (CPPs), enabling it to enter cells independently. This unexpected property allows NF-YA to interact with its targets within the cell.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Cell-penetrating peptides (CPPs) are known for their ability to translocate cell membranes and facilitate molecular delivery.
- NF-Y is a transcription factor complex composed of two Histone Fold Domain (HFD) subunits and the sequence-specific NF-YA subunit.
- NF-YA contains alpha-helices rich in basic residues, a common characteristic of CPPs.
Purpose of the Study:
- To investigate whether the NF-YA subunit possesses intrinsic cell-penetrating capabilities.
- To identify the specific regions within NF-YA responsible for cell entry.
- To assess the functional consequences of NF-YA internalization within cells.
Main Methods:
- Mutagenesis studies to identify functional domains within NF-YA.
- Cellular uptake assays to determine NF-YA internalization efficiency.
- Protein trimerization and DNA binding assays to assess functional activity.
- Inhibition of differentiation assays in C2C12 myoblasts.
Main Results:
- NF-YA efficiently enters cells at nanomolar concentrations without the need for carrier peptides.
- Mutagenesis identified at least two distinct CPPs within NF-YA (A1 and A2), overlapping with nuclear localization signals (NLS).
- Internalized NF-YA retains its ability to trimerize with HFD subunits and bind the CCAAT DNA motif.
- Transfection of NF-YA into C2C12 cells inhibited myoblast differentiation.
Conclusions:
- The NF-YA subunit possesses inherent cell-penetrating peptide (CPP) activity, a novel and unexpected property.
- These CPPs are located in regions overlapping with known nuclear localization signals.
- Internalized NF-YA is functional, capable of forming the transcription factor complex and influencing cellular processes like differentiation.
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