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Updated: Feb 4, 2026

Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
Published on: June 24, 2021
HuR stabilizes a polyadenylated form of replication-dependent histone mRNAs under stress conditions
Incheol Ryu1,2, Yeonkyoung Park1,2, Jwa-Won Seo3
1Creative Research Initiatives Center for Molecular Biology of Translation, Korea University, Seoul, South Korea.
Abstract:
All metazoan mRNAs have a poly(A) tail at the 3' end with the exception of replication-dependent histone (RDH) mRNAs, which end in a highly conserved stem-loop (SL) structure. However, a subset of RDH mRNAs are reported to be polyadenylated under physiologic conditions. The molecular details of the biogenesis of polyadenylated RDH [poly(A)+ RDH] mRNAs remain unknown. In this study, our genome-wide analyses reveal that puromycin treatment or UVC irradiation stabilizes poly(A)+ RDH mRNAs, relative to canonical RDH mRNAs, which end in an SL structure. We demonstrate that the stabilization of poly(A)+ RDH mRNAs occurs in a translation-independent manner and is regulated via human antigen R (HuR) binding to the extended 3' UTR under stress conditions. Our data suggest that HuR regulates the expression of poly(A)+ RDH mRNAs.-Ryu, I., Park, Y., Seo, J.-W., Park, O. H., Ha, H., Nam, J.-W., Kim, Y. K. HuR stabilizes a polyadenylated form of replication-dependent histone mRNAs under stress conditions.
Insights
Stress stabilizes a polyadenylated form of replication-dependent histone (RDH) mRNAs. The human antigen R (HuR) protein binds the 3' untranslated region, regulating expression independently of translation.
Area of Science:
- Molecular Biology
- Gene Regulation
- RNA Biology
Background:
- Metazoan mRNAs typically possess a 3' poly(A) tail, except for replication-dependent histone (RDH) mRNAs, which feature a stem-loop (SL) structure.
- A small fraction of RDH mRNAs are polyadenylated under physiological conditions, but the mechanisms remain unclear.
Purpose of the Study:
- To investigate the molecular mechanisms governing the biogenesis of polyadenylated RDH [poly(A)+ RDH] mRNAs.
- To identify factors and conditions that influence the stability and expression of poly(A)+ RDH mRNAs.
Main Methods:
- Genome-wide analyses of mRNA stability under stress conditions (puromycin treatment, UVC irradiation).
- Investigation of translation-independent mechanisms.
- Assessment of human antigen R (HuR) binding to the 3' untranslated region (UTR) of RDH mRNAs.
Main Results:
- Puromycin treatment and UVC irradiation stabilize poly(A)+ RDH mRNAs relative to canonical SL-ending RDH mRNAs.
- Stabilization of poly(A)+ RDH mRNAs is translation-independent.
- HuR binding to the extended 3' UTR is crucial for regulating poly(A)+ RDH mRNA stability under stress.
Conclusions:
- HuR plays a significant role in regulating the expression of polyadenylated RDH mRNAs.
- Stress conditions can alter RDH mRNA processing, leading to a polyadenylated form regulated by HuR.
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