Related Experiment Video
Updated: Feb 4, 2026

Semi-Quantitative Analysis of Peptidoglycan by Liquid Chromatography Mass Spectrometry and Bioinformatics
Published on: October 13, 2020
Compositional and beam-size-dependent effects on pressure baseline in clumped isotope mass spectrometry
Ryan A Venturelli1, Brad E Rosenheim1
1College of Marine Science, University of South Florida, 140 7th Avenue South, St Petersburg, FL, 33701, USA.
Rationale:
The analysis of carbonate samples for the application of clumped isotopes to paleoclimate reconstruction necessitates smaller beam intensities. However, there is a relationship between beam intensity and pressure-dependent baseline (PBL), and therefore between beam intensity and the correction for PBL. Here we explain the relationship between PBL and beam intensity to develop a better correction protocol and an improved understanding of clumped isotope mass spectrometry.
Methods:
We describe a beam size experiment using our Isoprime isotope ratio mass spectrometer in which samples of the carbonate standard IAEA-C1 were analyzed at 30, 50, and 70 nA to establish an optimal protocol and a new method to correct for PBL using the theoretical constraint of invariable Δ47 over a range of δ47 (bulk isotope composition) values. We also explore the effects of both over- and under-correction of PBL on equilibrated and heated gas samples to understand the effect of mis-correction of PBL.
Results:
The results of our beam size experiments showed that a direct measurement of the baseline consistently introduced variability to measurements of the Δ47 of heated gases, equilibrated gases, and carbonate standards. These results necessitated a new protocol to account for PBL in our system. Our new approach flattens the reference frame line slope to 0 and, importantly, reduces the variability of data points about the heated gas line. We also describe, for the first time, an empirically derived description of the compositional effect of PBL.
Conclusions:
A seemingly small change in our isotope ratio mass spectrometer resulted in a better understanding of PBL, for which we have developed an empirically based correction protocol to apply. Our new protocol has the potential to reduce analytical time for laboratories measuring PBL, and supports the need for carbonate mineral-based clumped isotope standards.
Related Concept Videos
Mass Spectrometry: Isotope Effect
Isotopes
An element's atomic mass, or weight,...
Atomic Mass
Elements: Chemical Symbols and Isotopes
Some symbols are derived from the common English name of the element; others are abbreviations of the name in another language — Latin, Greek or German. For example, the symbol for aluminum (common name)...
Mass Spectrometry: Overview
Tandem Mass Spectrometry

