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Updated: Feb 4, 2026

Sensitive Measurement of Mitophagy by Flow Cytometry Using the pH-dependent Fluorescent Reporter mt-Keima
Published on: August 12, 2018
NDP52 interacts with mitochondrial RNA poly(A) polymerase to promote mitophagy
Norihiko Furuya1,2,3, Soichiro Kakuta4,5, Katsuhiko Sumiyoshi6,7
1Division for Development of Autophagy Modulating Drugs, Juntendo University Graduate School of Medicine, Tokyo, Japan nohuruya@juntendo.ac.jp nhattori@juntendo.ac.jp.
Abstract:
Parkin-mediated mitophagy is a quality control pathway that selectively removes damaged mitochondria via the autophagic machinery. Autophagic receptors, which interact with ubiquitin and Atg8 family proteins, contribute to the recognition of damaged mitochondria by autophagosomes. NDP52, an autophagy receptor, is required for autophagic engulfment of damaged mitochondria during mitochondrial uncoupler treatment. The N-terminal SKICH domain and C-terminal zinc finger motif of NDP52 are both required for its function in mitophagy. While the zinc finger motif contributes to poly-ubiquitin binding, the function of the SKICH domain remains unclear. Here, we show that NDP52 interacts with mitochondrial RNA poly(A) polymerase (MTPAP) via the SKICH domain. During mitophagy, NDP52 invades depolarized mitochondria and interacts with MTPAP dependent on the proteasome but independent of ubiquitin binding. Loss of MTPAP reduces NDP52-mediated mitophagy, and the NDP52-MTPAP complex attracts more LC3 than NDP52 alone. These results indicate that NDP52 and MTPAP form an autophagy receptor complex, which enhances autophagic elimination of damaged mitochondria.
Insights
NDP52 and MTPAP form a complex that enhances mitophagy, the process of removing damaged mitochondria. This NDP52-MTPAP complex improves the autophagic removal of cellular damage.
Area of Science:
- Cell Biology
- Molecular Biology
- Autophagy Research
Background:
- Mitophagy is a crucial cellular quality control process for removing damaged mitochondria.
- Autophagy receptors, like NDP52, mediate the recognition and engulfment of damaged mitochondria by autophagosomes.
- The precise function of NDP52's SKICH domain in mitophagy remained largely undefined.
Purpose of the Study:
- To elucidate the role of the NDP52 SKICH domain in mitophagy.
- To identify novel interaction partners of NDP52 involved in mitochondrial quality control.
- To understand how NDP52 contributes to the selective removal of damaged mitochondria.
Main Methods:
- Investigated NDP52 interactions using co-immunoprecipitation and cellular assays.
- Utilized mitophagy induction models with mitochondrial uncouplers.
- Assessed the impact of MTPAP depletion on NDP52-mediated mitophagy and LC3 recruitment.
Main Results:
- The SKICH domain of NDP52 directly interacts with mitochondrial RNA poly(A) polymerase (MTPAP).
- NDP52-MTPAP interaction occurs on depolarized mitochondria, dependent on the proteasome but not ubiquitin.
- Loss of MTPAP impairs NDP52-mediated mitophagy, and the complex enhances LC3 recruitment.
Conclusions:
- NDP52 and MTPAP form a novel autophagy receptor complex that enhances mitophagy.
- This complex facilitates the efficient autophagic elimination of damaged mitochondria.
- The NDP52-MTPAP interaction represents a key mechanism in mitochondrial quality control.
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