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Establishment of a Clinic-based Biorepository
Published on: May 29, 2017
ClinGen's GenomeConnect registry enables patient-centered data sharing
Juliann M Savatt1, Danielle R Azzariti2, W Andrew Faucett1,3
1Autism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.
Human Mutation
|October 13, 2018
Summary
GenomeConnect, a patient registry, enhances genomic data sharing by engaging patients. This patient-driven approach enriches public databases with novel variants and detailed phenotypes, benefiting research and clinical care.
Area of Science:
- Genomics
- Bioinformatics
- Patient Registries
Background:
- The Clinical Genome Resource (ClinGen) established GenomeConnect to facilitate patient engagement in genomic data sharing.
- Patient participation is crucial for building a comprehensive genomic knowledge base for clinical care and research.
Purpose of the Study:
- To evaluate the benefits and impact of patient-driven data sharing through the GenomeConnect registry.
- To highlight the value of patient-contributed genomic and phenotypic data for public databases.
Main Methods:
- GenomeConnect collects self-reported health information and genomic variants from patient genetic testing reports.
- Data is curated and shared with public databases, primarily ClinVar.
- Participant engagement in data sharing, variant updates, and community matching was assessed.
Main Results:
- 47.9% of shared variants were novel to ClinVar, demonstrating patients as a key data source.
- Enhanced phenotypic data was provided for 52.1% of variants already in ClinVar.
- 97.3% of participants opted for variant classification updates, and 60.4% engaged in participant matching.
Conclusions:
- Patient engagement in registries like GenomeConnect significantly contributes novel genomic data and detailed phenotypes to public resources.
- GenomeConnect offers benefits including data sharing, phenotype enhancement, variant update notifications, and community connections.
- Future plans include expanding patient-centric data sharing through partnerships to further benefit patients and the genomics community.
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