Related Experiment Video
Updated: Feb 3, 2026

Merging Absolute and Relative Quantitative PCR Data to Quantify STAT3 Splice Variant Transcripts
Published on: October 9, 2016
Identification of a splice variant of optineurin which is defective in autophagy and phosphorylation
Shivranjani C Moharir1, Megha Bansal1, Gopalakrishna Ramachandran1
1CSIR-Centre for Cellular and Molecular Biology, Hyderabad 500007, India.
Abstract:
Optineurin (Optn) is an autophagy receptor that performs various functions in cargo-selective and non-selective autophagy. Here, we have identified and characterized a splice variant of mouse optineurin mRNA, which produces a truncated protein lacking N-terminal 157 amino acids (d157mOptn). This mRNA and protein are expressed in several tissues and cells. d157mOptn has an intact LC3-interacting region and a serine (S187) in it. However, unlike normal optineurin, the d157mOptn was not phosphorylated at this site when expressed in mammalian cells, and showed reduced interaction with TBK1 (tank binding kinase) that mediates phosphorylation at S187 (S177 in human OPTN). This phosphorylation of Optn required intact N-terminal sequence as well as functional C-terminal ubiquitin-binding domain. Unlike normal optineurin, d157mOptn was unable to promote autophagosome and autolysosome formation upon expression in Optn-deficient cells. d157mOptn was recruited to mutant huntingtin aggregates, but unlike wild type optineurin, it was unable to clear these aggregates by autophagy in neuronal NSC-34 cells. Phospho-TBK1 was seen around mutant Huntingtin aggregates in Optn overexpressing cells but it was reduced in cells overexpressing d157mOptn. Thus, we have identified an isoform of mouse optineurin which is defective in cargo-selective and non-selective autophagy possibly due to loss of phosphorylation and impaired interaction with TBK1. This isoform, which inhibits autophagosome formation in neuronal cells, might be involved in selectively modulating some of the functions of Optn, such as autophagy. Our results provide an insight into the role of N-terminal domain of Optn in various autophagic functions.
Insights
Researchers discovered a new mouse optineurin (Optn) variant, d157mOptn, which impairs autophagy. This truncated Optn isoform fails to interact with TBK1 for phosphorylation, hindering autophagosome formation and mutant huntingtin aggregate clearance.
Area of Science:
- Cell Biology
- Molecular Biology
- Autophagy Research
Background:
- Optineurin (Optn) is a crucial autophagy receptor involved in both selective and non-selective autophagy.
- Dysfunctional autophagy is implicated in various neurodegenerative diseases.
Purpose of the Study:
- To identify and characterize novel splice variants of mouse optineurin.
- To investigate the functional consequences of a newly identified truncated optineurin isoform on autophagy and cargo clearance.
Main Methods:
- Identification and characterization of mouse optineurin splice variants using molecular biology techniques.
- Expression analysis of the truncated variant (d157mOptn) in various tissues and cells.
- Assessment of d157mOptn phosphorylation status and interaction with TBK1.
- Functional assays in Optn-deficient cells to evaluate autophagosome and autolysosome formation.
- Analysis of d157mOptn's role in clearing mutant huntingtin aggregates in neuronal cells.
Main Results:
- A novel splice variant, d157mOptn, was identified, producing a truncated protein lacking the N-terminal 157 amino acids.
- d157mOptn exhibits reduced interaction with TBK1 and is not phosphorylated at S187, unlike wild-type Optn.
- The truncated variant impairs autophagosome and autolysosome formation in Optn-deficient cells.
- d157mOptn fails to clear mutant huntingtin aggregates in neuronal cells, unlike wild-type Optn.
- Phosphorylation of Optn at S187 requires the intact N-terminal sequence and a functional C-terminal ubiquitin-binding domain.
Conclusions:
- A novel, functionally impaired optineurin isoform (d157mOptn) has been identified in mice.
- This isoform is defective in promoting autophagy, likely due to impaired TBK1 interaction and lack of phosphorylation.
- d157mOptn may act as a dominant-negative inhibitor of wild-type Optn function, potentially contributing to disease pathogenesis.
- The N-terminal domain of Optn is critical for its autophagic functions and interaction with TBK1.
Related Concept Videos
Alternative RNA Splicing
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Alternative RNA Splicing
RNA Splicing
Phosphorylation
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
Histone Variants at the Centromere
Autophagy
An autophagic pathway consists of a series of signaling events activated in response to diverse stress and physiological conditions such as food deprivation,...

