Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

The Periodic Table03:25

The Periodic Table

113.5K
As early chemists discovered more elements, they realized that various elements could be grouped by their similar chemical behaviors. One such grouping includes lithium (Li), sodium (Na), and potassium (K). All of these elements are shiny, conduct heat and electricity well, and have similar chemical properties. A second grouping includes calcium (Ca), strontium (Sr), and barium (Ba), which also are shiny, good conductors of heat and electricity, and have chemical properties in common. However,...
113.5K
Flow Table Test01:12

Flow Table Test

710
The flow table test is an established method used to assess the workability of concrete, particularly useful for evaluating highly flowable concrete mixes. This test employs an apparatus that consists of a wooden board topped with a steel plate, collectively weighing 35 pounds. The board is connected to a base via a hinge and measures 27.6 inches on each side.
Concrete is placed within a truncated cone mold that is 8 inches high with an 8-inch base diameter and a 5-inch top diameter. The...
710
Molecules and Compounds02:38

Molecules and Compounds

68.7K
Atoms and Molecules
68.7K
Contingency Table01:29

Contingency Table

4.2K
A contingency table provides a way of portraying data that can facilitate calculating probabilities. It is a method of displaying a frequency distribution as a table with rows and columns to show how two variables may be dependent (contingent) upon each other; The table helps determine conditional probabilities quite quickly and can help systematically organize, analyze and quantify data. The table displays sample values concerning two variables that may be dependent or contingent on one...
4.2K
Life Tables01:22

Life Tables

540
A life table is a statistical tool that summarizes the mortality and survival patterns of a population, providing detailed insights into the likelihood of survival or death across different age intervals within a cohort. By organizing data on survival probabilities and mortality rates, life tables offer a clear snapshot of population dynamics over time. They are extensively used in demography, public health, actuarial science, and ecology to analyze life expectancy, design health interventions,...
540
The Periodic Table and Organismal Elements00:57

The Periodic Table and Organismal Elements

202.8K
Overview
202.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Oligoclonal B cell expansion and passenger fusion genes predict response to Nivolumab in recurrent ovarian cancer: phase II Kyoto trial.

Cancer immunology, immunotherapy : CII·2026
Same author

Comprehensive Colorectal Cancer Stem Cell Transcriptomic Signatures That Can Predict Patient Prognostic Outcomes.

Cancer science·2025
Same author

A population-centered model for public health medicine.

Public health·2024
Same author

pyPept: a python library to generate atomistic 2D and 3D representations of peptides.

Journal of cheminformatics·2023
Same author

On the Medical Properties of Nitrate of Soda.

The North-Western medical and surgical journal·2023
Same author

Mutation burden-orthogonal tumor genomic subtypes delineate responses to immune checkpoint therapy.

Journal for immunotherapy of cancer·2022

Related Experiment Video

Updated: Feb 3, 2026

Quantification of Violacein in Chromobacterium violaceum and Its Inhibition by Bioactive Compounds
07:13

Quantification of Violacein in Chromobacterium violaceum and Its Inhibition by Bioactive Compounds

Published on: August 8, 2025

1.6K

Parsing Compound-Protein Bioactivity Tables.

J B Brown1

  • 1Life Science Informatics Research Unit, Laboratory of Molecular Biosciences, Kyoto University Graduate School of Medicine, Kyoto, Japan. jbbrown@kuhp.kyoto-u.ac.jp.

Methods in Molecular Biology (Clifton, N.J.)
|October 19, 2018
PubMed
Summary

This study presents methods for processing diverse bioactivity databases. It offers solutions for data parsing, merging, and unique molecule identification using accessible tools and code.

Keywords:
Bioactivity databaseChemogenomic dataCompound–protein datasetData managementVisualization

More Related Videos

Patterning Bioactive Proteins or Peptides on Hydrogel Using Photochemistry for Biological Applications
09:19

Patterning Bioactive Proteins or Peptides on Hydrogel Using Photochemistry for Biological Applications

Published on: September 15, 2017

7.7K
Caenorhabditis elegans as a Model System for Discovering Bioactive Compounds Against Polyglutamine-Mediated Neurotoxicity
08:16

Caenorhabditis elegans as a Model System for Discovering Bioactive Compounds Against Polyglutamine-Mediated Neurotoxicity

Published on: September 21, 2021

3.9K

Related Experiment Videos

Last Updated: Feb 3, 2026

Quantification of Violacein in Chromobacterium violaceum and Its Inhibition by Bioactive Compounds
07:13

Quantification of Violacein in Chromobacterium violaceum and Its Inhibition by Bioactive Compounds

Published on: August 8, 2025

1.6K
Patterning Bioactive Proteins or Peptides on Hydrogel Using Photochemistry for Biological Applications
09:19

Patterning Bioactive Proteins or Peptides on Hydrogel Using Photochemistry for Biological Applications

Published on: September 15, 2017

7.7K
Caenorhabditis elegans as a Model System for Discovering Bioactive Compounds Against Polyglutamine-Mediated Neurotoxicity
08:16

Caenorhabditis elegans as a Model System for Discovering Bioactive Compounds Against Polyglutamine-Mediated Neurotoxicity

Published on: September 21, 2021

3.9K

Area of Science:

  • Bioinformatics
  • Computational Chemistry
  • Drug Discovery

Background:

  • Numerous databases exist detailing compound-protein bioactivity.
  • Handling these diverse datasets presents significant data processing challenges.

Purpose of the Study:

  • To provide solutions for fundamental data processing tasks.
  • To enable efficient utilization of bioactivity databases.

Main Methods:

  • Data parsing to filter unusable entries.
  • Merging multiple databases for comprehensive analysis.
  • Identification of unique molecular entities.
  • Selection of relevant data subsets.

Main Results:

  • Standardized data processing tools are utilized.
  • Freely available computer program code is provided.
  • Solutions address common issues in bioactivity data management.

Conclusions:

  • Effective data processing is crucial for bioactivity research.
  • The provided methods facilitate easier database integration and analysis.
  • This work supports advancements in drug discovery and chemical biology.