IncFII plasmid carrying antimicrobial resistance genes in Shigella flexneri: Vehicle for dissemination
Dhiviya Prabaa Muthuirulandi Sethuvel1, Shalini Anandan1, Naveen Kumar Devanga Ragupathi1
1Department of Clinical Microbiology, Christian Medical College, Vellore 632 004, Tamil Nadu, India.
Objectives:
Plasmids harbouring antimicrobial resistance determinants in clinical strains are a significant public-health concern worldwide. The present study investigated such plasmids in clinical isolates of Shigella flexneri.
Methods:
A total of 162 Shigella isolates were obtained from stool specimens in the year 2015. Among the 70 multidrug-resistant (MDR) Shigella spp., 27 S. flexneri isolates were randomly selected for further characterisation. Antimicrobial resistance genes (ARGs) and plasmid incompatibility (Inc) types were analysed.
Results:
IncFII plasmids were found in 63% (17/27) of the studied S. flexneri isolates. ARGs such as dhfr1a (81%), sulII (74%), blaOXA (74%), blaTEM (33%), blaAmpC (30%), qnrS (15%) and qnrB (4%) were identified by PCR, whereas blaCTX-M was not detected. Next-generation sequencing of a representative S. flexneri IncFII-type plasmid (pSF470) revealed the presence of blaTEM1-B, blaDHA-1, qnrB10, mphA, sulI, sulII, strA, strB and tetR ARGs along with the intI1 integrase gene. In addition, pMLST analysis showed that the replicon belonged to F2:A-:B- type.
Conclusions:
This study helps to know the prevalent plasmid types in MDR Shigella isolates and will improve our understanding of resistance dissemination among enteric bacteria. ARGs in plasmids further highlight the importance of such studies in enteric bacteria.
Insights
Multidrug-resistant Shigella flexneri commonly carry IncFII plasmids with various antimicrobial resistance genes (ARGs). Understanding these plasmid types is crucial for tracking resistance spread in enteric bacteria.
Area of Science:
- Microbiology
- Genetics
- Public Health
Background:
- Plasmids carrying antimicrobial resistance determinants (ARGs) in clinical strains pose a global public health threat.
- Shigella flexneri is a significant enteric pathogen, and its multidrug-resistant (MDR) forms are of particular concern.
Purpose of the Study:
- To investigate the types of plasmids and associated antimicrobial resistance genes in clinical isolates of Shigella flexneri.
- To enhance understanding of resistance dissemination mechanisms in enteric bacteria.
Main Methods:
- Analysis of 162 Shigella isolates from stool specimens, with 27 multidrug-resistant (MDR) S. flexneri isolates selected for further characterization.
- Identification of antimicrobial resistance genes (ARGs) and plasmid incompatibility (Inc) types using PCR.
- Whole-genome sequencing of a representative IncFII-type plasmid (pSF470) and plasmid multi-locus sequence typing (pMLST).
Main Results:
- IncFII plasmids were prevalent, found in 63% (17/27) of the studied S. flexneri isolates.
- Common ARGs detected included dhfr1a (81%), sulII (74%), blaOXA (74%), blaTEM (33%), blaAmpC (30%), qnrS (15%), and qnrB (4%). blaCTX-M was not detected.
- Sequencing of pSF470 revealed multiple ARGs (e.g., blaTEM1-B, blaDHA-1, qnrB10, mphA, sulI, sulII, strA, strB, tetR) and the intI1 integrase gene; pMLST identified the replicon as F2:A-:B- type.
Conclusions:
- The study identifies prevalent plasmid types, particularly IncFII, in MDR Shigella isolates.
- Findings underscore the importance of studying plasmids and ARGs in enteric bacteria for understanding and combating antimicrobial resistance dissemination.
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