Inactive immune pathways in triple negative breast cancers that showed resistance to neoadjuvant chemotherapy as inferred from kinase activity profiles
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Updated: Feb 3, 2026

Studying Triple Negative Breast Cancer Using Orthotopic Breast Cancer Model
Published on: March 20, 2020
Takeshi Sawada1,2, Riet Hilhorst3, Savithri Rangarajan3
1Shien-Lab, National Cancer Center Hospital, Tokyo, Japan.
Abstract:
About 5% of Triple negative breast cancer patients (TNBCs) who receive neoadjuvant chemotherapy (NAC) experience progressive disease (PD). Few reports are published on TNBCs with PD during NAC, whereas TNBCs that respond to NAC have been well-studied. We investigated kinase activity profiles of TNBCs to explore the biological differences underlying the lack of response to NAC. Among 740 TNBCs, 20 non-responders were identified. Seven non-responders and 10 TNBCs that did not receive NAC (control group) were evaluated. No correlation was observed between NAC response and age, menopausal status, tumor size and axillary lymph node status. Tyrosine kinase activity profiles of TNBC primary tissues from NAC non-responders and the controls were determined with a peptide microarray system. Kinase activity measurements showed that 35 peptides had significantly (p < 0.05) lower phosphorylation in non-responders. ZAP70, LCK, SYK and JAK2 were identified as differentially active upstream kinases. Pathway analysis suggested lower activity in immune-related pathways in non-responders. The number of tumor infiltrating lymphocytes (TILs) was significantly lower (p = 0.0053) in non-responders. Kinases related to the immune system are less activated in non-responders. TILs evaluation suggested that the immune system is hardly active in non-responders and is not activated by NAC treatment.
Insights
Triple negative breast cancer (TNBC) patients resistant to neoadjuvant chemotherapy (NAC) show lower activity in immune-related kinases and fewer tumor-infiltrating lymphocytes (TILs). This suggests the immune system is less active and not stimulated by NAC in non-responders.
Area of Science:
- Oncology
- Immunology
- Biochemistry
Background:
- Triple negative breast cancer (TNBC) is an aggressive subtype.
- About 5% of TNBC patients receiving neoadjuvant chemotherapy (NAC) experience progressive disease (PD).
- TNBCs with PD during NAC are understudied compared to responders.
Purpose of the Study:
- To investigate kinase activity profiles in TNBC non-responders to NAC.
- To explore biological differences underlying lack of response to NAC in TNBC.
- To compare kinase activity and immune cell infiltration between non-responders and controls.
Main Methods:
- Analysis of 740 TNBC cases to identify 20 non-responders to NAC.
- Evaluation of 7 non-responders and 10 control TNBCs (no NAC).
- Determination of tyrosine kinase activity profiles using a peptide microarray system.
- Assessment of tumor-infiltrating lymphocytes (TILs).
Main Results:
- No correlation between NAC response and clinical factors (age, menopausal status, tumor size, lymph node status).
- 35 peptides showed significantly lower phosphorylation in non-responders (p < 0.05).
- ZAP70, LCK, SYK, and JAK2 identified as differentially active upstream kinases.
- Lower activity in immune-related pathways and significantly fewer TILs observed in non-responders (p = 0.0053).
Conclusions:
- Kinases related to the immune system are less activated in TNBC non-responders to NAC.
- The immune system appears less active in non-responders and is not activated by NAC treatment.
- These findings highlight potential immune-based biomarkers for NAC response in TNBC.
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