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Updated: Feb 3, 2026

Phospho Flow Cytometry with Fluorescent Cell Barcoding for Single Cell Signaling Analysis and Biomarker Discovery
Published on: October 4, 2018
Phospho Flow Cytometry with Fluorescent Cell Barcoding for Single Cell Signaling Analysis and Biomarker Discovery
1Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo; K. G. Jebsen Centre for B cell malignancies and K. G. Jebsen Centre for Cancer Immunotherapy, University of Oslo; sigrid.skanland@ncmm.uio.no.
Abstract:
Aberrant cell signaling plays a central role in cancer development and progression. Most novel targeted therapies are indeed directed at proteins and protein functions, and cell signaling aberrations may therefore serve as biomarkers to indicate personalized treatment options. As opposed to DNA and RNA analyses, changes in protein activity can more efficiently evaluate the mechanisms underlying drug sensitivity and resistance. Phospho flow cytometry is a powerful technique that measures protein phosphorylation events at the cellular level, an important feature that distinguishes this method from other antibody-based approaches. The method allows for simultaneous analysis of multiple signaling proteins. In combination with fluorescent cell barcoding, larger medium- to high-throughput data-sets can be acquired by standard cytometer hardware in short time. Phospho flow cytometry has applications both in studies of basic biology and in clinical research, including signaling analysis, biomarker discovery and assessment of pharmacodynamics. Here, a detailed experimental protocol is provided for phospho flow analysis of purified peripheral blood mononuclear cells, using chronic lymphocytic leukemia cells as an example.
Insights
Phospho flow cytometry analyzes protein activity for cancer biomarkers. This technique aids in understanding drug resistance and personalizing cancer treatments.
Area of Science:
- Oncology
- Immunology
- Biochemistry
Background:
- Aberrant cell signaling is crucial in cancer development.
- Targeted cancer therapies focus on protein functions.
- Cellular protein activity changes can predict drug sensitivity and resistance.
Purpose of the Study:
- To present phospho flow cytometry as a method for analyzing cell signaling.
- To highlight its utility in biomarker discovery and pharmacodynamics.
- To provide a protocol for phospho flow analysis of peripheral blood mononuclear cells, using chronic lymphocytic leukemia as an example.
Main Methods:
- Phospho flow cytometry measures protein phosphorylation at the single-cell level.
- Allows simultaneous analysis of multiple signaling proteins.
- Fluorescent cell barcoding enables high-throughput data acquisition.
Main Results:
- Demonstrates phospho flow cytometry's capability for detailed signaling pathway analysis.
- Shows its applicability in clinical research for biomarker identification.
- Provides a practical protocol for analyzing chronic lymphocytic leukemia cells.
Conclusions:
- Phospho flow cytometry is a powerful tool for studying cell signaling in cancer.
- It offers advantages over DNA/RNA analysis for evaluating drug response mechanisms.
- The described protocol facilitates its use in basic and clinical research settings.
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