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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Aurora A Kinase Inhibition Is Synthetic Lethal with Loss of the RB1 Tumor Suppressor Gene
Xueqian Gong1, Jian Du1, Stephen H Parsons1
1Eli Lilly and Company, Indianapolis, Indiana.
Abstract:
Loss-of-function mutations in the retinoblastoma gene RB1 are common in several treatment-refractory cancers such as small-cell lung cancer and triple-negative breast cancer. To identify drugs synthetic lethal with RB1 mutation (RB1 mut), we tested 36 cell-cycle inhibitors using a cancer cell panel profiling approach optimized to discern cytotoxic from cytostatic effects. Inhibitors of the Aurora kinases AURKA and AURKB showed the strongest RB1 association in this assay. LY3295668, an AURKA inhibitor with over 1,000-fold selectivity versus AURKB, is distinguished by minimal toxicity to bone marrow cells at concentrations active against RB1 mut cancer cells and leads to durable regression of RB1 mut tumor xenografts at exposures that are well tolerated in rodents. Genetic suppression screens identified enforcers of the spindle-assembly checkpoint (SAC) as essential for LY3295668 cytotoxicity in RB1-deficient cancers and suggest a model in which a primed SAC creates a unique dependency on AURKA for mitotic exit and survival. SIGNIFICANCE: The identification of a synthetic lethal interaction between RB1 and AURKA inhibition, and the discovery of a drug that can be dosed continuously to achieve uninterrupted inhibition of AURKA kinase activity without myelosuppression, suggest a new approach for the treatment of RB1-deficient malignancies, including patients progressing on CDK4/6 inhibitors.See related commentary by Dick and Li, p. 169.This article is highlighted in the In This Issue feature, p. 151.
Insights
Loss-of-function mutations in the retinoblastoma gene (RB1) create vulnerabilities. Inhibiting Aurora kinase A (AURKA) shows synthetic lethality with RB1 mutations, offering a new treatment strategy for RB1-deficient cancers.
Area of Science:
- Molecular oncology
- Cancer therapeutics
- Cell cycle regulation
Background:
- Loss-of-function mutations in the retinoblastoma gene (RB1) are prevalent in treatment-refractory cancers like small-cell lung cancer and triple-negative breast cancer.
- Identifying synthetic lethal interactions with RB1 mutations is crucial for developing targeted therapies.
Purpose of the Study:
- To identify cell-cycle inhibitors that are synthetically lethal with RB1 mutations (RB1mut).
- To evaluate the therapeutic potential of Aurora kinase A (AURKA) inhibition in RB1-deficient cancers.
Main Methods:
- Screened 36 cell-cycle inhibitors using a cancer cell panel profiling approach.
- Utilized genetic suppression screens to identify key pathways involved in drug sensitivity.
- Assessed drug efficacy and toxicity in vitro and in vivo using RB1mut cancer cell lines and tumor xenografts.
Main Results:
- Aurora kinases AURKA and AURKB inhibitors showed the strongest association with RB1 mutations.
- LY3295668, a selective AURKA inhibitor, demonstrated minimal bone marrow toxicity and induced durable regression of RB1mut xenografts.
- Enforcers of the spindle-assembly checkpoint (SAC) were essential for LY3295668 cytotoxicity in RB1-deficient cancers.
Conclusions:
- A synthetic lethal interaction exists between RB1 deficiency and AURKA inhibition.
- LY3295668 offers a potential new therapeutic strategy for RB1-deficient malignancies, including those progressing on CDK4/6 inhibitors.
- Continuous dosing of LY3295668 achieves uninterrupted AURKA inhibition without myelosuppression.
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