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Rup (RNA-seq Usability Assessment Pipeline) - Quality Control for Bulk RNA-seq Experiments in Eukaryotes
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Three Methods to Purify Leukocytes and RNA Quality Assessment
Zhang Heng1,2, Liangliang Ruan1,2, Rongxing Gan1,2
1Shanghai Clinical Research Center, Shanghai, China.
Biopreservation and Biobanking
|November 1, 2018
Summary
For researchers needing high-quality leukocyte RNA, red blood cell lysis buffer (RBC lysis) offers a simple and effective method. This technique is recommended for biobanks to ensure reliable downstream applications in translational medicine.
Area of Science:
- Immunology and Translational Medicine
- Cellular Biology and Genomics
Background:
- Leukocytes are crucial for innate and adaptive immunity, and vital for translational medicine, precision medicine, and cell therapy.
- High-quality RNA isolation from leukocytes is essential for downstream research, but the process is sensitive to various factors.
- Standardized methods are needed to ensure consistent and reliable leukocyte isolation for research applications.
Purpose of the Study:
- To evaluate and compare three distinct methods for leukocyte separation from whole blood.
- To assess the RNA quality obtained from each leukocyte isolation method.
- To identify the most suitable method for biobanks and downstream research applications.
Main Methods:
- Leukocyte separation using lymphocyte separation medium (LSM).
- Leukocyte separation using an optimized LSM protocol.
- Leukocyte separation using a red blood cell lysis buffer (RBC lysis).
- RNA extraction and subsequent quality assessment following each separation method.
Main Results:
- All three tested methods successfully purified leukocytes, yielding RNA that met basic requirements for downstream studies.
- The RBC lysis method demonstrated particular advantages in terms of procedural simplicity.
- RNA quality from donated samples was found to be suitable using the RBC lysis method.
Conclusions:
- The red blood cell lysis buffer (RBC lysis) method is recommended for biobanks due to its simplicity and the adequate RNA quality it provides.
- This method supports reliable downstream research in fields like translational and precision medicine.
- Standardization of leukocyte isolation is key for consistent results in cell-based research and therapies.
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