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Updated: Feb 2, 2026

Generation of Maternal Mutants Using zpc:cas9 Knock-in Zebrafish
Published on: July 22, 2025
Zebrafish hhex-null mutant develops an intrahepatic intestinal tube due to de-repression of cdx1b and pdx1
Ce Gao1, Weidong Huang1, Yuqi Gao1
1MOE Key Laboratory for Molecular Animal Nutrition, College of Animal Sciences, Zhejiang University, 866 Yu Hang Tang Road, Hangzhou, China.
Insights
Haematopoietically expressed-homeobox (Hhex) protein is crucial for the development of the hepatopancreatic duct (HPD) system. Zebrafish lacking Hhex fail to form the HPD, revealing a new genetic network regulating digestive tract development.
Area of Science:
- Developmental biology
- Genetics
- Molecular biology
Background:
- The hepatopancreatic duct (HPD) system is vital for connecting the liver and pancreas to the intestine.
- The precise molecular mechanisms governing HPD development, particularly the role of Haematopoietically expressed-homeobox (Hhex) protein, are not fully understood.
Purpose of the Study:
- To elucidate the molecular mechanism by which Hhex regulates the development of the hepatopancreatic duct (HPD) system in zebrafish.
- To identify the genetic network involved in HPD patterning and morphogenesis.
Main Methods:
- Analysis of zebrafish hhex-null mutants.
- Immunohistochemistry using biliary and intestinal markers (Annexin A4, sox9b, fabp2a).
- Cell lineage tracing.
- Gene knockdown experiments (cdx1b, pdx1).
- Chromatin-immunoprecipitation (ChIP) assays.
Main Results:
- Zebrafish hhex-null mutants lack the HPD system, with biliary and HPD markers (Annexin A4, sox9b) absent.
- An intrahepatic intestinal tube expressing fabp2a replaces the HPD in mutants, originating from non-hepatocyte/cholangiocyte sources.
- Ectopic expression of cdx1b and pdx1 was observed in the aberrant intestinal tube.
- Knockdown of cdx1b and pdx1 partially restored sox9b expression.
- Hhex directly binds to and represses the promoters of pdx1 and cdx1b.
Conclusions:
- Hhex acts as a repressor of pdx1 and cdx1b, preventing the formation of an intestinal tube in place of the HPD.
- A genetic network involving Hhex, Cdx1b, Pdx1, and Sox9b is essential for the correct patterning and morphogenesis of the HPD and digestive tract systems in zebrafish.
Abstract:
The hepatopancreatic duct (HPD) system links the liver and pancreas to the intestinal tube and is composed of the extrahepatic biliary duct, gallbladder, and pancreatic duct. Haematopoietically expressed-homeobox (Hhex) protein plays an essential role in the establishment of HPD; however, the molecular mechanism remains elusive. Here, we show that zebrafish hhex-null mutants fail to develop the HPD system characterized by lacking the biliary marker Annexin A4 and the HPD marker sox9b. The hepatobiliary duct part of the mutant HPD system is replaced by an intrahepatic intestinal tube characterized by expressing the intestinal marker fatty acid-binding protein 2a (fabp2a). Cell lineage analysis showed that this intrahepatic intestinal tube is not originated from hepatocytes or cholangiocytes. Further analysis revealed that cdx1b and pdx1 are expressed ectopically in the intrahepatic intestinal tube and knockdown of cdx1b and pdx1 could restore the expression of sox9b in the mutant. Chromatin-immunoprecipitation analysis showed that Hhex binds to the promoters of pdx1 and cdx1b genes to repress their expression. We therefore propose that Hhex, Cdx1b, Pdx1, and Sox9b form a genetic network governing the patterning and morphogenesis of the HPD and digestive tract systems in zebrafish.
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