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Rapid and Specific Detection of Acinetobacter baumannii Infections Using a Recombinase Polymerase Amplification/Cas12a-based System
Published on: April 25, 2025
Functional Analysis and Antivirulence Properties of a New Depolymerase from a Myovirus That Infects Acinetobacter
Hugo Oliveira1, Ana Rita Costa1, Alice Ferreira1
1CEB-Centre of Biological Engineering, University of Minho, Braga, Portugal.
Abstract:
Acinetobacter baumannii is an important pathogen causative of health care-associated infections and is able to rapidly develop resistance to all known antibiotics, including colistin. As an alternative therapeutic agent, we have isolated a novel myovirus (vB_AbaM_B9) which specifically infects and makes lysis from without in strains of the K45 and K30 capsule types, respectively. Phage B9 has a genome of 93,641 bp and encodes 167 predicted proteins, of which 29 were identified by mass spectrometry. This phage holds a capsule depolymerase (B9gp69) able to digest extracted exopolysaccharides of both K30 and K45 strains and remains active in a wide range of pH values (5 to 9), ionic strengths (0 to 500 mM), and temperatures (20 to 80°C). B9gp69 was demonstrated to be nontoxic in a cell line model of the human lung and to make the K45 strain fully susceptible to serum killing in vitro Contrary to the case with phage, no resistance development was observed by bacteria targeted with the B9gp69. Therefore, capsular depolymerases may represent attractive antimicrobial agents against A. baumannii infections.IMPORTANCE Currently, phage therapy has revived interest for controlling hard-to-treat bacterial infections. Acinetobacter baumannii is an emerging Gram-negative pathogen able to cause a variety of nosocomial infections. Additionally, this species is becoming more resistant to several classes of antibiotics. Here we describe the isolation of a novel lytic myophage B9 and its recombinant depolymerase. While the phage can be a promising alternative antibacterial agent, its success in the market will ultimately depend on new regulatory frameworks and general public acceptance. We therefore characterized the phage-encoded depolymerase, which is a natural enzyme that can be more easily managed and used. To our knowledge, the therapeutic potential of phage depolymerase against A. baumannii is still unknown. We show for the first time that the K45 capsule type is an important virulence factor of A. baumannii and that capsule removal via the recombinant depolymerase activity helps the host immune system to combat the bacterial infection.
Insights
A novel bacteriophage, B9, and its depolymerase enzyme show promise for combating antibiotic-resistant Acinetobacter baumannii infections. The depolymerase effectively degrades bacterial capsules, enhancing susceptibility to immune responses and avoiding resistance development.
Area of Science:
- Microbiology
- Bacteriophage Therapy
- Antimicrobial Resistance
Background:
- Acinetobacter baumannii is a significant cause of healthcare-associated infections.
- Rapid development of antibiotic resistance, including to colistin, poses a major therapeutic challenge.
- Bacteriophage therapy is being re-evaluated as an alternative strategy for difficult-to-treat bacterial infections.
Purpose of the Study:
- To isolate and characterize a novel bacteriophage effective against Acinetobacter baumannii.
- To investigate the therapeutic potential of a phage-encoded capsule depolymerase as an antimicrobial agent.
- To evaluate the enzyme's efficacy and safety against specific Acinetobacter baumannii capsule types.
Main Methods:
- Isolation and characterization of a novel myovirus, vB_AbaM_B9 (Phage B9).
- Genomic analysis of Phage B9 and identification of its encoded proteins, including capsule depolymerase B9gp69.
- Assessment of B9gp69 activity across various pH, ionic strength, and temperature conditions.
- Evaluation of B9gp69's efficacy in degrading K45 and K30 capsule types and its effect on bacterial susceptibility to serum killing in vitro.
- Toxicity assessment of B9gp69 in a human lung cell line model.
Main Results:
- Phage B9 specifically infects and lyses Acinetobacter baumannii strains of K45 and K30 capsule types.
- The phage-encoded capsule depolymerase, B9gp69, effectively digests exopolysaccharides from both capsule types.
- B9gp69 remains active under diverse environmental conditions (pH 5-9, 0-500 mM ionic strength, 20-80°C).
- B9gp69 is non-toxic to human lung cells and renders the K45 strain susceptible to serum killing in vitro.
- No bacterial resistance to B9gp69 was observed, unlike with phage treatment.
Conclusions:
- Capsular depolymerases, such as B9gp69, represent a promising alternative antimicrobial strategy against Acinetobacter baumannii.
- The K45 capsule type is identified as a key virulence factor, and its removal by depolymerase aids host immune response.
- Phage-encoded depolymerases offer a potentially manageable therapeutic agent with a low risk of resistance development.
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