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Designing of an epitope-based peptide vaccine against walking pneumonia: an immunoinformatics approach
P Ambili Unni1, A M Mohamed Thoufic Ali2, Madhusmita Rout1
1Department of Biotechnology, School of Bio Sciences and Technology, VIT University, Vellore, Tamil Nadu, 632014, India.
Abstract:
Mycoplasma pneumoniae is a substantial respiratory pathogen that develops not only pneumonia but also other respiratory diseases, which mimic viral respiratory syndromes. Nevertheless, vaccine development for this pathogen delays behind as immunity correlated with protection is now predominantly unknown. In the present study, an immunoinformatics pipeline is utilized for epitope-based peptide vaccine design, which can trigger a critical immune response against M. pneumoniae. A total of 105 T-cell epitopes from 12 membrane associated proteins and 7 T-cell epitopes from 5 cytadherence proteins of M. pneumoniae were obtained and validated. Thus, 18 peptides with 9-mer core sequence were identified as best T-cell epitopes by considering the number of residues with > 75% in favored region. Further, the crucial screening studies predicted three peptides with good binding affinity towards HLA molecules as best T-cell and B-cell epitopes. Based on this result, visualization, and dynamic simulation for the three epitopes (WIHGLILLF, VILLFLLLF, and LLAWMLVLF) were assessed. The predicted epitopes needs to be further validated for their adept use as vaccine. Collectively, the study opens up a new horizon with extensive therapeutic application against M. pneumoniae and its associated diseases.
Insights
This study designed a peptide vaccine for Mycoplasma pneumoniae, a common respiratory pathogen. Computational methods identified promising T-cell and B-cell epitopes for potential therapeutic use against M. pneumoniae infections.
Area of Science:
- Immunoinformatics
- Vaccine Design
- Computational Biology
Background:
- Mycoplasma pneumoniae causes significant respiratory illnesses, including pneumonia.
- Current vaccine development is hindered by unknown protective immunity.
- Existing vaccines lack efficacy against M. pneumoniae.
Purpose of the Study:
- To design an epitope-based peptide vaccine against Mycoplasma pneumoniae using immunoinformatics.
- To identify T-cell and B-cell epitopes with high potential for triggering immune responses.
- To explore therapeutic applications against M. pneumoniae and associated diseases.
Main Methods:
- Utilized an immunoinformatics pipeline to screen T-cell epitopes from M. pneumoniae membrane and cytadherence proteins.
- Identified 18 best T-cell epitopes based on favored region residues.
- Predicted three optimal T-cell and B-cell epitopes with high HLA binding affinity.
Main Results:
- 105 T-cell epitopes from membrane proteins and 7 from cytadherence proteins were obtained.
- 18 peptides with 9-mer core sequences were identified as top T-cell epitopes.
- Three peptides (WIHGLILLF, VILLFLLLF, LLAWMLVLF) showed good HLA binding affinity and were selected for further analysis.
Conclusions:
- The study successfully identified potential vaccine candidates against Mycoplasma pneumoniae.
- In silico predictions provide a foundation for developing novel peptide vaccines.
- Further experimental validation is required to confirm the efficacy of these epitopes as vaccines.
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