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Updated: Feb 2, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
CircSLC3A2 functions as an oncogenic factor in hepatocellular carcinoma by sponging miR-490-3p and regulating PPM1F
Hongjian Wang1, Wei Chen2, Ming Jin3
1The Fifth Department of Digestion, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, People's Republic of China.
Background:
Non-coding RNAs (ncRNAs) have been reported to participate in tumor progression by regulating gene expression. Previous studies showed that protein phosphatase Mg2+/Mn2+ dependent 1F (PPM1F) acts a dual role in cancer growth and metastasis. But, the underlying mechanisms by which ncRNAs regulate PPM1F expression in hepatocellular carcinoma (HCC) are poorly understood.
Methods:
The association between PPM1F or miR-490-3p expression and clinicopathological features and prognosis in patients with HCC was analyzed by TCGA RNA-sequencing data. CircSLC3A2 was identified to bind with miR-490-3p by bioinformatic analysis, and the binding sites between miR-490-3p and PPM1F or circSLC3A2 were confirmed by dual luciferase report and RNA immunoprecipitation (RIP) assays. The localization and clinical significance of miR-490-3p and circSLC3A2 in patients with HCC were investigated by fluorescence in situ hybridization (FISH). MTT, Agar, and Transwell assays were conducted to evaluate the effects of miR-490-3p or circSLC3A2 on cell proliferation and invasive potential.
Results:
The expression of PPM1F or miR-490-3p was associated with poor survival and tumor recurrence, and acted as an independent prognostic factor in patients with HCC. Re-expression of miR-490-3p inhibited HCC cell proliferation and invasion by targeting PPM1F, but its inhibitor reversed these effects. Moreover, circSLC3A2, predominantly localized in the cytoplasm, exhibited an oncogenic role by sponging miR-490-3p and regulating PPM1F expression, and harbored a positive correlation with poor survival in patients with HCC.
Conclusion:
CircSLC3A2 acts as an oncogenic factor in HCC by sponging miR-490-3p and regulating PPM1F expression.
Insights
Circular RNA circSLC3A2 promotes hepatocellular carcinoma (HCC) by sponging miR-490-3p, which targets protein phosphatase PPM1F. This interaction impacts HCC progression and patient survival.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Non-coding RNAs (ncRNAs) regulate gene expression in tumor progression.
- Protein phosphatase Mg2+/Mn2+ dependent 1F (PPM1F) has a dual role in cancer.
- Mechanisms of ncRNA regulation of PPM1F in hepatocellular carcinoma (HCC) are unclear.
Purpose of the Study:
- Investigate the role of ncRNAs in regulating PPM1F expression in HCC.
- Determine the clinical significance of PPM1F, miR-490-3p, and circSLC3A2 in HCC.
- Elucidate the molecular mechanisms underlying HCC progression involving these factors.
Main Methods:
- Analyzed TCGA RNA-sequencing data for PPM1F and miR-490-3p expression in HCC.
- Used bioinformatic analysis, dual luciferase reporter, and RIP assays to confirm interactions between circSLC3A2, miR-490-3p, and PPM1F.
- Performed FISH, MTT, Agar, and Transwell assays to assess cellular effects and clinical significance.
Main Results:
- PPM1F and miR-490-3p expression correlated with poor HCC prognosis and recurrence.
- miR-490-3p inhibited HCC cell proliferation and invasion by targeting PPM1F.
- circSLC3A2 acted as an oncogenic factor by sponging miR-490-3p, affecting PPM1F, and correlated with poor survival.
Conclusions:
- circSLC3A2 functions as an oncogenic factor in HCC.
- circSLC3A2 sponges miR-490-3p, thereby regulating PPM1F expression.
- This circSLC3A2/miR-490-3p/PPM1F axis contributes to HCC progression and poor prognosis.
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