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Published on: March 15, 2024
Excisionase in Pf filamentous prophage controls lysis-lysogeny decision-making in Pseudomonas aeruginosa
Yangmei Li1,2, Xiaoxiao Liu1, Kaihao Tang1
1Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, PR China.
Abstract:
Pf filamentous prophages are prevalent among clinical and environmental Pseudomonas aeruginosa isolates. Pf4 and Pf5 prophages are integrated into the host genomes of PAO1 and PA14, respectively, and play an important role in biofilm development. However, the genetic factors that directly control the lysis-lysogeny switch in Pf prophages remain unclear. Here, we identified and characterized the excisionase genes in Pf4 and Pf5 (named xisF4 and xisF5, respectively). XisF4 and XisF5 represent two major subfamilies of functional excisionases and are commonly found in Pf prophages. While both of them can significantly promote prophage excision, only XisF5 is essential for Pf5 excision. XisF4 activates Pf4 phage replication by upregulating the phage initiator gene (PA0727). In addition, xisF4 and the neighboring phage repressor c gene pf4r are transcribed divergently and their 5'-untranslated regions overlap. XisF4 and Pf4r not only auto-activate their own expression but also repress each other. Furthermore, two H-NS family proteins, MvaT and MvaU, coordinately repress Pf4 production by directly repressing xisF4. Collectively, we reveal that Pf prophage excisionases cooperate in controlling lysogeny and phage production.
Insights
Researchers identified key excisionase genes, XisF4 and XisF5, in Pf prophages. These proteins control Pseudomonas aeruginosa phage lysis-lysogeny switching and production, impacting biofilm development.
Area of Science:
- Microbiology
- Molecular Biology
- Bacteriology
Background:
- Pf filamentous prophages are common in Pseudomonas aeruginosa.
- These prophages influence biofilm formation.
- The lysis-lysogeny switch control in Pf prophages is not well understood.
Purpose of the Study:
- Identify and characterize excisionase genes in Pf4 and Pf5 prophages.
- Investigate the role of these excisionases in prophage activity.
- Elucidate the regulatory mechanisms governing Pf prophage lysogeny and production.
Main Methods:
- Gene identification and characterization.
- Prophage excision assays.
- Gene expression analysis (e.g., transcription, promoter studies).
- Protein-protein interaction studies (implied by repression).
Main Results:
- XisF4 and XisF5 were identified as functional excisionases in Pf4 and Pf5, respectively.
- Both promote prophage excision, but XisF5 is essential for Pf5.
- XisF4 upregulates Pf4 replication initiator (PA0727).
- XisF4 and Pf4r exhibit complex auto-regulation and cross-repression.
- MvaT and MvaU repress Pf4 production by inhibiting xisF4.
Conclusions:
- Pf prophage excisionases play crucial roles in regulating lysogeny and phage production.
- A complex regulatory network involving excisionases, repressors, and host factors controls Pf prophage lifecycle.
- Understanding these mechanisms is vital for managing Pseudomonas aeruginosa infections and biofilms.
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