Related Experiment Video
Updated: Feb 2, 2026

Production, Crystallization, and Structure Determination of the IKK-binding Domain of NEMO
Published on: December 28, 2019
Ternary crystal structure of human RORγ ligand-binding-domain, an inhibitor and corepressor peptide provides a new
Masato Noguchi1, Akihiro Nomura2, Satoki Doi2
1Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan. masato.noguchi@jt.com.
Abstract:
Retinoic acid-related orphan receptor gamma (RORγ) plays pivotal roles in autoimmune diseases by controlling the lineage of interleukin 17 (IL-17)-producing CD4+ T cells (Th17 cells). Structure-based drug design has proven fruitful in the development of inhibitors targeting the ligand binding domain (LBD) of RORγ. Here, we present the crystal structure of a novel RORγ inhibitor co-complex, in the presence of a corepressor (CoR) peptide. This ternary complex with compound T reveals the structural basis for an inhibitory mechanism different from the previously reported inverse agonist. Compared to the inverse agonist, compound T induces about 2 Å shift of helix 5 (H5) backbone and side-chain conformational changes of Met365 on H5. These conformational changes correlate to reduced CoR peptide binding to RORγ-LBD in the presence of compound T, which suggests that the shift of H5 is responsible. This crystal structure analysis will provide useful information for the development of novel and efficacious drugs for autoimmune disorders.
Insights
We determined the crystal structure of a novel Retinoic acid-related orphan receptor gamma (RORγ) inhibitor, compound T, bound to RORγ and a corepressor peptide. This reveals a unique inhibitory mechanism distinct from inverse agonists, aiding autoimmune disease drug development.
Area of Science:
- Structural biology
- Immunology
- Pharmacology
Background:
- Retinoic acid-related orphan receptor gamma (RORγ) is a key regulator of T helper 17 (Th17) cells, which are implicated in autoimmune diseases.
- Inhibitors targeting the RORγ ligand binding domain (LBD) are promising therapeutic agents for autoimmune disorders.
- Structure-based drug design has successfully identified RORγ inhibitors.
Purpose of the Study:
- To elucidate the structural basis of a novel RORγ inhibitor, compound T, in complex with RORγ-LBD and a corepressor peptide.
- To understand the mechanism of action of compound T and compare it with previously identified inverse agonists.
- To provide insights for the development of new drugs targeting RORγ for autoimmune diseases.
Main Methods:
- X-ray crystallography was used to determine the co-complex structure of RORγ-LBD, compound T, and a corepressor peptide.
- Structural analysis focused on conformational changes induced by compound T binding.
- Comparison of the ternary complex structure with previously reported RORγ-inverse agonist complexes.
Main Results:
- The crystal structure of the ternary complex revealed a novel inhibitory mechanism mediated by compound T.
- Compound T induced a ~2 Å shift in helix 5 (H5) backbone and conformational changes in Met365.
- These structural alterations led to reduced binding of the corepressor peptide to RORγ-LBD, suggesting H5 shift is critical for inhibition.
Conclusions:
- The novel RORγ inhibitor compound T employs a distinct mechanism of action compared to inverse agonists.
- The observed conformational changes, particularly the H5 shift, are crucial for the inhibitory effect.
- This structural understanding provides a foundation for designing more effective RORγ-targeted therapies for autoimmune conditions.
More Related Videos
Related Concept Videos
Ligand Binding Sites
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Ligand Binding Sites
Ligand Binding and Linkage
Ligand Binding and Linkage
Ionic Crystal Structures
Most monatomic ions behave as charged spheres, and their attraction for ions of opposite charge is the same in every direction. Consequently, stable structures for ionic compounds result (1) when ions of one charge are surrounded by as many ions as possible of the opposite...
Conservation of Protein Domains Over Different Proteins
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...

