Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Overview of Advanced Functional Groups02:22

Overview of Advanced Functional Groups

29.9K

Functional groups are groups of atoms with specific chemical properties that occur within organic molecules and are sometimes denoted as “R”. Functional groups can “functionalize” a compound by enabling it to adopt different physical and chemical properties.
Types of Advanced Functional Groups
The table below summarizes some of the major functional groups in organic chemistry.
29.9K
Extraction: Advanced Methods00:56

Extraction: Advanced Methods

1.2K
Metal ions can be separated from one another by complexation with organic ligands–the chelating agent– to form uncharged chelates. Here, the chelating agent must contain hydrophobic groups and behave as a weak acid, losing a proton to bind with the metal. Since most organic ligands used in this process are insoluble or undergo oxidation in the aqueous phase, the chelating agent is initially added to the organic phase and extracted into the aqueous phase. The metal-ligand complex is...
1.2K
Sample Preparation for Analysis: Advanced Techniques01:08

Sample Preparation for Analysis: Advanced Techniques

1.4K
Accurate analysis of complex samples often requires advanced preparation techniques to achieve reliable and reproducible results. Samples containing inorganic or organic materials can be challenging to dissolve or decompose effectively. Standard sample preparation methods include acid digestion, fusion, dry ashing, and wet digestion.
Acid digestion with strong acids is commonly used to dissolve inorganic materials that are insoluble (do not dissolve) in water. This method can be useful for...
1.4K
Cardiopulmonary Resuscitation V: Advanced Airway Management Techniques01:30

Cardiopulmonary Resuscitation V: Advanced Airway Management Techniques

549
Airway management is essential in emergency and surgical medicine, ensuring ventilation and oxygenation in patients who cannot maintain their own airway. Clinicians use a range of techniques and devices to secure the airway, depending on the patient’s condition and the clinical context. Key methods include endotracheal intubation, rapid sequence intubation (RSI), supraglottic airway devices, and advanced visualization aids. In cases where these approaches fail, surgical airway...
549
Visual System01:26

Visual System

1.8K
Light enters the eye through the cornea, a transparent, dome-shaped surface covering the surface of the eyeball that helps to direct and focus incoming light. This light is then channeled toward the pupil, an adjustable opening whose size is controlled by the iris. The iris, a pigmented muscle, regulates the amount of light entering the eye by contracting or dilating the pupil, thereby ensuring optimal light levels for clear vision.
Once through the pupil, the light passes through the lens, a...
1.8K
Visual Agnosia01:12

Visual Agnosia

1.1K
Visual agnosia is a condition characterized by the inability to recognize visually presented objects despite having normal vision. For instance, a person with visual agnosia can describe the shape and color of an object but cannot identify or name it. This impairment does not affect their visual field, acuity, color vision, brightness discrimination, language, or memory. An example of this condition in a social setting is someone at a dinner party asking for "that silver thing with a round...
1.1K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Generative AI in structure-based drug discovery.

BMC biology·2026
Same author

Precision fragment addition: domain-specific DeepFrag2 models for smarter lead optimization.

Digital discovery·2026
Same author

Teaching old docks new tricks with machine learning enhanced ensemble docking.

Scientific reports·2024
Same author

CENsible: Interpretable Insights into Small-Molecule Binding with Context Explanation Networks.

Journal of chemical information and modeling·2024
Same author

The chaperone PrsA2 regulates the secretion, stability, and folding of listeriolysin O during <i>Listeria monocytogenes</i> infection.

mBio·2024
Same author

MolModa: accessible and secure molecular docking in a web browser.

Nucleic acids research·2024
Same journal

MCFST: Spatial domain identification method based on multi-view graph convolutional network and graph fusion network.

Bioinformatics (Oxford, England)·2026
Same journal

SpaBiT: Enhancing Spatial Transcriptomics Resolution via Bidirectional Attention Transformers.

Bioinformatics (Oxford, England)·2026
Same journal

EDEL: Enhancing Dense Retrievers for Curation of Biomedical Knowledge Bases.

Bioinformatics (Oxford, England)·2026
Same journal

Informative Relational Learning for Adverse Reaction Prediction with Enhanced Generalization to Novel Drugs.

Bioinformatics (Oxford, England)·2026
Same journal

An interpretable deep learning framework uncovers features governing CRISPR-Cas9 genome-editing efficiency.

Bioinformatics (Oxford, England)·2026
Same journal

3DICE: Interpretable 3D Cross-Modal Learning for Drug-Target Interaction Prediction and Large-Scale Drug Discovery.

Bioinformatics (Oxford, England)·2026
See all related articles

Related Experiment Video

Updated: Feb 2, 2026

In Vitro Model of Human Cutaneous Hypertrophic Scarring using Macromolecular Crowding
08:20

In Vitro Model of Human Cutaneous Hypertrophic Scarring using Macromolecular Crowding

Published on: May 1, 2020

7.2K

BlendMol: advanced macromolecular visualization in Blender.

Jacob D Durrant

    Bioinformatics (Oxford, England)
    |November 28, 2018
    PubMed
    Summary
    This summary is machine-generated.

    BlendMol is a new Blender plugin that bridges the gap between scientific visualization software and advanced rendering techniques. It allows users to import molecular scenes from VMD or PyMOL into Blender for high-quality image generation.

    More Related Videos

    Optimization of Crystal Growth for Neutron Macromolecular Crystallography
    12:29

    Optimization of Crystal Growth for Neutron Macromolecular Crystallography

    Published on: March 13, 2021

    5.9K
    In Vitro Analysis of PDZ-dependent CFTR Macromolecular Signaling Complexes
    10:05

    In Vitro Analysis of PDZ-dependent CFTR Macromolecular Signaling Complexes

    Published on: August 13, 2012

    11.7K

    Related Experiment Videos

    Last Updated: Feb 2, 2026

    In Vitro Model of Human Cutaneous Hypertrophic Scarring using Macromolecular Crowding
    08:20

    In Vitro Model of Human Cutaneous Hypertrophic Scarring using Macromolecular Crowding

    Published on: May 1, 2020

    7.2K
    Optimization of Crystal Growth for Neutron Macromolecular Crystallography
    12:29

    Optimization of Crystal Growth for Neutron Macromolecular Crystallography

    Published on: March 13, 2021

    5.9K
    In Vitro Analysis of PDZ-dependent CFTR Macromolecular Signaling Complexes
    10:05

    In Vitro Analysis of PDZ-dependent CFTR Macromolecular Signaling Complexes

    Published on: August 13, 2012

    11.7K

    Area of Science:

    • Structural Biology
    • Computational Chemistry
    • Scientific Visualization

    Background:

    • VMD and PyMOL are standard tools for macromolecular structure analysis.
    • These tools lack advanced rendering capabilities found in other industries.
    • Blender offers advanced rendering but has a steep learning curve for scientific use.

    Purpose of the Study:

    • To develop a plugin that integrates VMD/PyMOL scenes into Blender.
    • To enable high-quality, publication-ready visualizations of molecular structures.
    • To bridge the gap between scientific analysis and advanced rendering.

    Main Methods:

    • Developed BlendMol, a Python-based plugin for Blender.
    • Implemented functionality to import scenes from VMD and PyMOL.
    • Leveraged Blender's rendering engine for enhanced molecular visualizations.

    Main Results:

    • BlendMol successfully imports VMD and PyMOL scenes into Blender.
    • Generated images exhibit advanced rendering techniques.
    • The plugin facilitates creation of compelling visuals for scientific communication.

    Conclusions:

    • BlendMol enhances molecular visualization by combining scientific software with advanced rendering.
    • The plugin produces high-quality images suitable for manuscripts, outreach, and education.
    • BlendMol offers a powerful solution for scientific communication and data presentation.