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Updated: Feb 1, 2026

A Standardized Liquid Biopsy Preanalytical Protocol for Downstream Circulating-Free DNA Applications
Published on: September 16, 2022
Measuring tumor mutation burden in non-small cell lung cancer: tissue versus liquid biopsy
Francesca Fenizia1, Raffaella Pasquale1, Cristin Roma1
1Cell Biology and Biotherapy Unit, Istituto Nazionale Tumori, IRCSS, Fondazione G. Pascale, Napoli, Italy.
Abstract:
The introduction in the clinic of immune checkpoint inhibitors (IOs) has represented an important improvement for the treatment of patients with advanced non-small cell lung cancer (NSCLC). These drugs have shown a higher activity as compared with chemotherapy in both first- and second-line of treatment, with some patients experiencing a long-lasting response. More recently, combinations of IOs have entered clinical trials in different tumor types including NSCLC. Nevertheless, IOs are active only in a subgroup of patients and biomarkers for appropriate patients' selection are urgently needed to offer the patients an effective therapy, and also to manage the costs. Tumor mutation burden (TMB) has powerfully emerged as a potential biomarker for immunotherapy and might enter the clinic in the next months, although different challenges are still unsolved. Different methods exist to evaluate TMB in tissue, ranging from whole exome sequencing (WES) to targeted sequencing of smaller sets of genes, which need to be fully standardized to ensure that patients receive an appropriate TMB test with clear clinical interpretation. In addition, as already happened for the implementation of liquid biopsy testing from NSCLC patients to identify targetable alterations, researchers are also evaluating the possibility to calculate TMB in blood, to further enlarge the number of NSCLC patients who may benefit from immunotherapy. Preliminary data highlight the difficulty to develop targeted sequencing panels for the assessment of TMB starting from the circulating cell free DNA (cfDNA). The applicability of TMB testing on liquid biopsy needs further investigation and may be clarified within the ongoing clinical trials.
Insights
Immune checkpoint inhibitors improve advanced non-small cell lung cancer treatment. Tumor mutation burden (TMB) is a promising biomarker, but standardized tissue and blood tests are needed for patient selection and effective immunotherapy.
Area of Science:
- Oncology
- Immunotherapy
- Biomarker Discovery
Background:
- Immune checkpoint inhibitors (IOs) have significantly advanced advanced non-small cell lung cancer (NSCLC) treatment.
- While effective in some patients, IOs show limited activity in others, necessitating predictive biomarkers.
- Tumor mutation burden (TMB) is emerging as a key biomarker for predicting immunotherapy response.
Purpose of the Study:
- To review the role of TMB as a biomarker for immunotherapy in NSCLC.
- To discuss the challenges and standardization needs for TMB assessment in both tissue and liquid biopsies.
- To highlight the potential of TMB testing for patient selection and cost-effective treatment strategies.
Main Methods:
- Review of current literature on IOs and TMB in NSCLC.
- Analysis of different methods for TMB evaluation (whole exome sequencing, targeted sequencing).
- Exploration of TMB assessment in circulating cell-free DNA (cfDNA) for liquid biopsy applications.
Main Results:
- IOs demonstrate higher efficacy than chemotherapy in NSCLC, with potential for long-lasting responses.
- TMB is a powerful potential biomarker for immunotherapy, with ongoing efforts towards clinical implementation.
- Standardization of TMB testing methods is crucial for reliable clinical interpretation.
- Assessing TMB from cfDNA presents significant challenges, requiring further investigation.
Conclusions:
- TMB holds significant promise as a predictive biomarker for immunotherapy in NSCLC patients.
- Standardized, validated TMB testing is essential for clinical decision-making.
- Liquid biopsy-based TMB assessment requires further research and validation for broader application in NSCLC treatment.
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