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A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
Published on: July 1, 2020
Differential associations of depression-related phenotypes with cardiometabolic risks: Polygenic analyses and
Brian Chi-Fung Wong1, Carlos Kwan-Long Chau1, Fu-Kiu Ao1
1School of Biomedical Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
Insights
This study reveals shared genetic links between depression and cardiometabolic diseases, with risks varying by depression subtype. These findings may guide targeted prevention and drug discovery for these common comorbidities.
Area of Science:
- Genetics
- Psychiatry
- Cardiology
Background:
- Depression and cardiometabolic (CM) diseases frequently co-occur, but the underlying mechanisms remain unclear.
- The relationship between depression subtypes and CM diseases requires further investigation.
Purpose of the Study:
- To investigate the genetic overlap between depression phenotypes and 20 CM traits.
- To identify shared genetic variants, pathways, and potential drug repositioning opportunities for depression-CM comorbidities.
Main Methods:
- Utilized polygenic risk scores (PRS) and LD score regression to analyze genetic overlap.
- Included GWAS data for major depressive disorder (MDD), general depressive symptoms (DS), and neuroticism.
- Identified shared genetic variants, enriched pathways, and potential drug candidates.
Main Results:
- Significant genetic overlap was found between depression phenotypes (MDD, DS, neuroticism) and CM traits.
- Most depression subtypes showed positive polygenic associations with CM abnormalities, except for MDD-CONVERGE (severe melancholic depression), which showed reduced CM risks.
- Enrichment analyses identified inflammation-related pathways, and potential drug repositioning candidates like bupropion were highlighted.
Conclusions:
- Shared genetic factors contribute to the comorbidity of depression and CM diseases.
- The association between depression and CM traits varies by depression subtype, impacting cardiovascular event prevention strategies.
- Identifying shared genetic factors can inform novel therapeutic strategies for these comorbidities.
Background:
Numerous studies have suggested associations between depression and cardiometabolic (CM) diseases. However, little is known about the mechanism underlying this comorbidity, and whether the relationship differs by depression subtypes.
Methods:
Using polygenic risk scores (PRS) and linkage disequilibrium (LD) score regression, we investigated the genetic overlap of various depression-related phenotypes with a comprehensive panel of 20 CM traits. GWAS results for major depressive disorder (MDD) were taken from the PGC and CONVERGE studies, with the latter focusing on severe melancholic depression. GWAS results on general depressive symptoms (DS) and neuroticism were also included. We identified the shared genetic variants and inferred enriched pathways. We also looked for drugs over-represented among the top-shared genes, with an aim to finding repositioning opportunities for comorbidities.
Results:
We found significant genetic overlap between MDD, DS, and neuroticism with cardiometabolic traits. In general, positive polygenic associations with CM abnormalities were observed except for MDD-CONVERGE. Counterintuitively, PRS representing severe melancholic depression was associated with reduced CM risks. Enrichment analyses of shared SNPs revealed many interesting pathways such as those related to inflammation that underlie the comorbidity of depressive and CM traits. Using a gene-set analysis approach, we also revealed several repositioning candidates with literature support (e.g., bupropion).
Conclusions:
Our study highlights shared genetic bases of depression with CM traits, and suggests the associations vary by depression subtypes, which may have implications in targeted prevention of cardiovascular events for patients. Identification of shared genetic factors may also guide drug discovery for the comorbidities.
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