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Updated: Feb 1, 2026

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
Published on: May 28, 2021
Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in
Ana Pinharanda1,2, Marjolaine Rousselle3, Simon H Martin1
1Department of Zoology, University of Cambridge, Cambridge, UK.
Sex chromosomes evolve faster than autosomes. In butterflies, Z-linked genes show higher adaptive evolution rates, especially male-biased genes, challenging the fast-Z effect theory.
Area of Science:
- Evolutionary Biology
- Genomics
- Molecular Evolution
Background:
- Sex chromosomes exhibit unique evolutionary dynamics compared to autosomes due to their hemizygous nature.
- Recessive mutations on sex chromosomes are more exposed to natural selection, potentially accelerating molecular evolution.
- The fast-Z effect proposes accelerated rates of adaptive substitution on Z chromosomes, but evidence is mixed across species.
Purpose of the Study:
- To investigate sex- and tissue-specific gene expression patterns in the butterfly Heliconius melpomene.
- To compare molecular evolution patterns, including divergence, polymorphism, and selection, between Z-linked and autosomal genes.
- To test the hypothesis of an accelerated rate of adaptive evolution on the Z chromosome (fast-Z effect) in Heliconius butterflies.
Main Methods:
- Improved the reference genome annotation for Heliconius melpomene.
- Analyzed RNA sequencing data from male and female abdomens and sequenced female ovary and gut tissues.
- Compared sequence divergence, polymorphism, and selection strengths for Z-linked and autosomal genes between H. melpomene and H. erato.
Main Results:
- The rate of adaptive substitutions is significantly higher for Z-linked genes than for autosomal genes.
- Contrary to expectations, male-biased genes exhibit a higher rate of adaptive evolution than female-biased genes.
- No significant increase in adaptive evolution or purifying selection was observed for genes expressed in ovary tissue.
Conclusions:
- The study provides evidence supporting an accelerated rate of adaptive evolution for Z-linked genes in Heliconius butterflies.
- Findings suggest that gene expression bias (male-biased) may play a more significant role than tissue-specific expression in Z chromosome evolution.
- Results contribute mixed evidence to the fast-Z effect literature, highlighting the complexity of sex chromosome evolution.
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