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Updated: Feb 1, 2026

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
The relationship between bacterial sources and genotype to the antimicrobial resistance pattern of Burkholderia
Muhammad Abubakar Sadiq1,2, Latiffah Hassan1, Saleha Abdul Aziz1
1Department of Microbiology and Pathology, Faculty of Veterinary Medicine, Universiti Putra Malaysia (UPM), 44300 UPM Serdang, Selangor Darul Ehsan Malaysia.
Background:
Melioidosis is a fatal emerging infectious disease of both man and animal caused by bacteria Burkholderia pseudomallei. Variations were suggested to have existed among the different B. pseudomallei clinical strains/genotypes which may implicate bacterial susceptibility and resistance toward antibiotics.
Aim:
This study was designed to determine whether the phenotypic antibiotic resistance pattern of B. pseudomallei is associated with the source of isolates and the genotype.
Materials And Methods:
A collection of 111 B. pseudomallei isolates from veterinary cases of melioidosis and the environments (soil and water) were obtained from stock cultures of previous studies and were phylogenetically characterized by multilocus sequence typing (ST). The susceptibility to five antibiotics, namely meropenem (MEM), imipenem, ceftazidime (CAZ), cotrimoxazole (SXT), and co-amoxiclav (AMC), recommended in both acute and eradication phases of melioidosis treatment were tested using minimum inhibitory concentration antibiotics susceptibility test.
Results:
Majority of isolates were susceptible to all antibiotics tested while few resistant strains to MEM, SXT, CAZ, and AMC were observed. Statistically significant association was found between resistance to MEM and the veterinary clinical isolates (p<0.05). The likelihood of resistance to MEM was significantly higher among the novel ST 1130 isolates found in veterinary cases as compared to others.
Conclusion:
The resistance to MEM and SXT appeared to be higher among veterinary isolates, and the novel ST 1130 was more likely to be resistant to MEM as compared to others.
Insights
Antibiotic resistance in Burkholderia pseudomallei varies by isolate source and genotype. Veterinary isolates and novel ST 1130 strains showed higher resistance to meropenem (MEM) and cotrimoxazole (SXT).
Area of Science:
- Microbiology
- Infectious Diseases
- Antimicrobial Resistance
Background:
- Melioidosis, a fatal emerging infectious disease, is caused by Burkholderia pseudomallei.
- Potential variations in B. pseudomallei strains may influence antibiotic susceptibility and resistance patterns.
Purpose of the Study:
- To investigate the association between the phenotypic antibiotic resistance patterns of B. pseudomallei.
- To determine if resistance patterns correlate with isolate source (veterinary vs. environmental) and bacterial genotype.
Main Methods:
- Phylogenetic characterization of 111 B. pseudomallei isolates using multilocus sequence typing (MLST).
- Antimicrobial susceptibility testing (minimum inhibitory concentration) for meropenem (MEM), imipenem, ceftazidime (CAZ), cotrimoxazole (SXT), and co-amoxiclav (AMC).
Main Results:
- Most isolates were susceptible to tested antibiotics; however, resistance to MEM, SXT, CAZ, and AMC was observed in a few strains.
- A statistically significant association was found between resistance to MEM and veterinary clinical isolates (p<0.05).
- Novel ST 1130 isolates from veterinary cases exhibited a significantly higher likelihood of MEM resistance compared to other isolates.
Conclusions:
- Resistance to MEM and SXT appears more prevalent in veterinary B. pseudomallei isolates.
- The novel ST 1130 genotype is associated with an increased likelihood of MEM resistance.
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