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Related Concept Videos

MicroRNAs01:22

MicroRNAs

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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After...
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MicroRNAs01:22

MicroRNAs

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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
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Histone Variants at the Centromere02:30

Histone Variants at the Centromere

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Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
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The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

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The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
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The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

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Conserved Binding Sites01:49

Conserved Binding Sites

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Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
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In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
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Functional microRNA binding site variants.

Ye Yuan1, Joanne B Weidhaas1

  • 1Department of Radiation Oncology, UCLA, Los Angeles, CA, USA.

Molecular Oncology
|December 12, 2018
PubMed
Summary
This summary is machine-generated.

Germline single nucleotide polymorphisms (SNPs) affecting microRNA binding sites (miR-SNPs) can disrupt cancer-related pathways. These miR-SNPs show promise as biomarkers for cancer risk, prognosis, and treatment.

Keywords:
KRAS-variantbiomarkersfunctional variantsmicroRNA binding sitesmicroRNAspolymorphisms

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Area of Science:

  • Genetics and Genomics
  • Molecular Biology
  • Cancer Research

Background:

  • Germline single nucleotide polymorphisms (SNPs) are common genetic variations.
  • Polymorphisms in noncoding regions can disrupt gene regulation.
  • MicroRNAs (miRNAs) play crucial roles in biological pathways, including tumorigenesis.

Purpose of the Study:

  • To summarize the functional impact of microRNA-associated polymorphisms (miR-SNPs).
  • To identify clinically useful prognostic or predictive miR-SNP biomarkers for cancer.

Main Methods:

  • Review of existing literature on functional impacts of miR-SNPs.
  • Analysis of miR-SNPs associated with cancer risk, prognosis, and treatment outcomes.
  • Identification of key miR-SNPs with potential clinical utility.

Main Results:

  • Polymorphisms altering miRNA binding sites (miR-SNPs) can dysregulate key cancer pathways.
  • Numerous miR-SNPs have emerged as significant biomarkers for cancer.
  • Specific miR-SNPs demonstrate potential as prognostic and predictive markers.

Conclusions:

  • miR-SNPs represent a critical class of genetic variations with functional consequences in cancer.
  • These genetic variants are valuable biomarkers for assessing cancer risk and patient outcomes.
  • Further research into specific miR-SNPs may lead to improved clinical applications in oncology.