Structure and Dynamics of the Hydration Shell: Spatially Decomposed Time Correlation Approach
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Updated: Feb 1, 2026

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
Published on: June 24, 2013
Eva Pluhařová1, Pavel Jungwirth2, Nobuyuki Matubayasi3,4
1J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences , Dolejškova 2155/3 , 18223 Prague 8 , Czech Republic.
Abstract:
Molecular simulations provide insight into solvation structures and dynamics with unparalleled spatial and temporal resolution. Here, we take advantage of this fact and develop a set of generally applicable computational tools for a detailed analysis of the hydration shell around an ionic or molecular solute. These tools allow us to quantify and visualize orientationally resolved radial distribution functions as well as distance-resolved orientational time-correlation functions of water molecules surrounding the solute. Such a detailed view of the hydration shells allows us to unravel important structural and dynamical features, which are not accessible when employing standard analysis techniques.
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