Related Experiment Video
Updated: Feb 1, 2026

Crystallizing Membrane Proteins for Structure Determination using Lipidic Mesophases
Published on: November 21, 2010
Synthesis and crystal structure of double-three ring (D3R)-type cage siloxanes modified with dimethylsilanol groups
Naoto Sato1, Kazuma Tochigi, Yoshiyuki Kuroda
1Department of Applied Chemistry, Faculty of Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan. shimojima@waseda.jp kuroda@waseda.jp.
Abstract:
The controlled assembly of molecular building blocks enables the rational design of nanomaterials. In this study, two types of cage-type oligosiloxanes with double-three ring (D3R) structures are modified with dimethylsilanol groups to form supramolecular assemblies. One is the siloxane cage derived from Si(OEt)4 (denoted as the Q6 cage), and the other is the organosiloxane cage derived from (EtO)3Si-CH2-Si(OEt)3 (denoted as the T6 cage). The syntheses of the silanol-modified cages are performed in two steps: (i) dimethylsilylation of the corner Si-O- groups on the Q6 and T6 cages to introduce Si-H groups and (ii) subsequent oxidation of the Si-H groups to Si-OH groups. Dimethylsilylation of the cages is conducted at much lower temperatures (-94 and -78 °C for Q6 and T6 cages, respectively) than those used for conventional silylation, which is the key to suppressing the deterioration of the unstable D3R structure. The subsequent oxidation of the Si-H groups proceeds successfully, and the crystallization of these molecules is induced by the hydrogen bonds of the silanol groups. The crystal structure of the Q6 cage modified with dimethylsilanol groups can be regarded as a layered structure with tetrahydrofuran between the layers. In contrast, the T6 cage modified with dimethylsilanol groups assembled to form a more densely packed structure with no included solvent molecules. The differences between the crystal structures are discussed in terms of the shape of the cages. The insight into the effect of the shape of the cage on its assembly behavior will lead to the designable synthesis of crystalline siloxane-based materials.
More Related Videos
08:49Organic Structure-directing Agent-free Synthesis for *BEA-type Zeolite Membrane
Published on: February 22, 2020
18:45Harvesting and Cryo-cooling Crystals of Membrane Proteins Grown in Lipidic Mesophases for Structure Determination by Macromolecular Crystallography
Published on: September 2, 2012
Related Concept Videos
Ionic Crystal Structures
Most monatomic ions behave as charged spheres, and their attraction for ions of opposite charge is the same in every direction. Consequently, stable structures for ionic compounds result (1) when ions of one charge are surrounded by as many ions as possible of the opposite...
Types of Non-structural Cracks in Concrete
Plastic shrinkage cracks typically form within hours after the concrete is poured. The concrete's surface dries faster than the bottom, creating tensile stress that the still-plastic concrete cannot withstand, leading to diagonal or randomly patterned cracks on the concrete surface.
Structure of Lipids
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
Accessory Structures of the Skin: Hair Growth and Types
The Thoracic Cage: Sternum
The sternum is the elongated bony structure on the anterior side of the thoracic cage. It consists of three parts: the manubrium, the body, and the xiphoid...