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Updated: Feb 1, 2026

T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
Published on: January 12, 2021
Cytomegalovirus Exposure in the Elderly Does Not Reduce CD8 T Cell Repertoire Diversity
Paul Lindau1,2, Rithun Mukherjee3, Miriam V Gutschow2
1Molecular and Cellular Biology Graduate Program, University of Washington School of Medicine, Seattle, WA 98195; plindau@uw.edu hrobins@fredhutch.org.
Abstract:
With age, the immune system becomes less effective, causing increased susceptibility to infection. Chronic CMV infection further impairs immune function and is associated with increased mortality in the elderly. CMV exposure elicits massive CD8+ T cell clonal expansions and diminishes the cytotoxic T cell response to subsequent infections, leading to the hypothesis that to maintain homeostasis, T cell clones are expelled from the repertoire, reducing T cell repertoire diversity and diminishing the ability to combat new infections. However, in humans, the impact of CMV infection on the structure and diversity of the underlying T cell repertoire remains uncharacterized. Using TCR β-chain immunosequencing, we observed that the proportion of the peripheral blood T cell repertoire composed of the most numerous 0.1% of clones is larger in the CMV seropositive and gradually increases with age. We found that the T cell repertoire in the elderly grows to accommodate CMV-driven clonal expansions while preserving its underlying diversity and clonal structure. Our observations suggest that the maintenance of large CMV-reactive T cell clones throughout life does not compromise the underlying repertoire. Alternatively, we propose that the diminished immunity in elderly individuals with CMV is due to alterations in cellular function rather than a reduction in CD8+ T cell repertoire diversity.
Insights
Aging and Cytomegalovirus (CMV) infection impair immune function. This study found that while CMV expands T cell clones in older adults, it does not reduce overall T cell diversity, suggesting functional changes, not repertoire loss, cause diminished immunity.
Area of Science:
- Immunology
- Gerontology
- Infectious Diseases
Background:
- Immune system effectiveness declines with age, increasing infection susceptibility.
- Chronic Cytomegalovirus (CMV) infection exacerbates immune dysfunction and mortality in the elderly.
- CMV infection causes large CD8+ T cell expansions, potentially reducing T cell repertoire diversity and impairing responses to new infections.
Purpose of the Study:
- To investigate the impact of CMV infection on the structure and diversity of the human T cell repertoire in aging individuals.
- To test the hypothesis that T cell repertoire contraction occurs due to CMV-driven clonal expansions.
Main Methods:
- Utilized TCR β-chain immunosequencing to analyze peripheral blood T cell repertoires.
- Quantified the proportion of the T cell repertoire occupied by the most frequent clones.
- Compared T cell repertoire structure and diversity between CMV seropositive and seronegative individuals across different age groups.
Main Results:
- The proportion of the T cell repertoire occupied by the top 0.1% of clones is larger in CMV seropositive individuals and increases with age.
- The elderly T cell repertoire expands to accommodate CMV-driven clonal expansions.
- The underlying T cell repertoire diversity and clonal structure are preserved despite large CMV-reactive T cell clones.
Conclusions:
- Maintenance of large CMV-reactive T cell clones does not necessarily compromise the overall T cell repertoire diversity in the elderly.
- Diminished immunity in elderly individuals with CMV may stem from alterations in T cell function rather than a reduction in CD8+ T cell repertoire diversity.
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