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Updated: Jan 31, 2026

Kinetic Visualization of Single-Cell Interspecies Bacterial Interactions
Published on: August 5, 2020
Multi-agent simulation regulated by microbe-oriented thermodynamics and kinetics equations for exploiting
Qing Liang1, Huichuan Zhuang2, Miaojia Lu2
1School of Environment, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, China; School of Environment, Harbin Institute of Technology, P.O. Box 2614, 73 Huanghe Road, Nangang District, Harbin, Heilongjiang Province 150090, China; Department. of Civil and Environmental Engineering, Hong Kong Polytechnic University, Office ZS919, Phase 8 Development, Hong Kong.
Abstract:
Multi-agent simulation (MAS) regulated by microbe-oriented thermodynamics and kinetics equations were performed for exploiting the interspecies dynamics and evolution in anaerobic respiration and bioelectrochemical systems. A newly-defined kinetically thermodynamic parameter is recognized microbes as agents in various conditions, including electron donors and acceptors, temperature, pH, etc. For verification of the MAS, the treatment of synthetic wastewater containing glucose and acetate was evaluated in four 25°C laboratory-scale reactors with different electron acceptors and cathode materials that had potential for methanogenesis, hydrogenesis, sulfidogenesis and exoelectrogenesis. Within 1000 h operation, the reactors performance and microbial structures using 16S rRNA sequencing matched with the MAS, suggesting acetoclastic exoelectrogenesis predominance (Geobacter). After 2400 h, MAS observed the co-existence of acetoclastic methanogenesis and acetoclastic and propionate exoelectrogenesis, as was reported previously. Such microbial evolution from the short-term to long-term operation likely resulted from the glucose-driven propionate. The MAS developed is applicable in a wide range of complex engineering and natural ecosystems.
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