Unraveling gut microbiota in Parkinson's disease and atypical parkinsonism
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Updated: Oct 11, 2026

Gene-environment Interaction Models to Unmask Susceptibility Mechanisms in Parkinson's Disease
Published on: January 7, 2014
Michela Barichella1, Marco Severgnini2, Roberto Cilia1
1Parkinson Institute, Azienda Socio Sanitaria Territoriale (ASST) Gaetano Pini-CTO, Milan, Italy.
Background:
Although several studies have suggested that abnormalities in gut microbiota may play a critical role in the pathogenesis of PD, data are still extremely heterogeneous.
Methods:
16S gene ribosomal RNA sequencing was performed on fecal samples of 350 individuals, subdivided into idiopathic PD (n = 193, of whom 39 were drug naïve) stratified by disease duration, PSP (n = 22), MSA (n = 22), and healthy controls (HC; n = 113). Several confounders were taken into account, including dietary habits.
Results:
Despite the fact that unadjusted comparison of PD and HC showed several differences in relative taxa abundances, the significant results were greatly reduced after adjusting for confounders. Although most of these differences were associated with disease duration, lower abundance in Lachnospiraceae was the only difference between de novo PD and HC (remaining lower across almost all PD duration strata). Decreased Lachnospiraceae and increased Lactobacillaceae and Christensenellaceae were associated with a worse clinical profile, including higher frequencies of cognitive impairment, gait disturbances, and postural instability. When compared with HC, MSA and PSP patients shared the changes in PD, with a few exceptions: in MSA, Lachnospiraceae were not lower, and Prevotellaceae were reduced; in PSP, Lactobacillaceae were similar, and Streptococcaceae were reduced.
Conclusions:
Gut microbiota may be an environmental modulator of the pathogenesis of PD and contribute to the interindividual variability of clinical features. Data are influenced by PD duration and several confounders that need to be taken into account in future studies. Prospective studies in de novo PD patients are needed to elucidate the net effect of dysbiosis on the progression of the disease. © 2018 International Parkinson and Movement Disorder Society.
Insights
Gut microbiota alterations are linked to Parkinson's disease (PD) progression and clinical variability. Adjusting for confounders reveals specific bacterial changes, like lower Lachnospiraceae, associated with PD severity.
Area of Science:
- Microbiome research
- Neurodegenerative diseases
- Gut-brain axis
Background:
- Gut microbiota dysbiosis is implicated in Parkinson's disease (PD) pathogenesis.
- Existing data on PD and gut microbiota are highly heterogeneous.
- Environmental factors, including diet, may influence the gut microbiome in PD.
Purpose of the Study:
- To investigate gut microbiota composition in idiopathic PD, progressive supranuclear palsy (PSP), multiple system atrophy (MSA), and healthy controls (HC).
- To identify microbial signatures associated with PD duration, disease severity, and specific clinical features.
- To assess the impact of confounders on gut microbiota profiles in neurodegenerative diseases.
Main Methods:
- 16S ribosomal RNA gene sequencing of fecal samples from 350 individuals.
- Stratification of participants into idiopathic PD (including drug-naïve), PSP, MSA, and HC groups.
- Statistical analysis accounting for confounders such as dietary habits and disease duration.
Main Results:
- Unadjusted analyses showed numerous differences between PD and HC, but most were attenuated after confounder adjustment.
- Lower abundance of Lachnospiraceae was the sole consistent difference in de novo PD compared to HC.
- Decreased Lachnospiraceae and increased Lactobacillaceae/Christensenellaceae correlated with worse clinical outcomes (cognitive impairment, gait issues).
- MSA and PSP showed some shared and distinct microbial alterations compared to PD and HC.
Conclusions:
- Gut microbiota may modulate PD pathogenesis and contribute to clinical heterogeneity.
- PD duration and confounders significantly influence gut microbiota findings.
- Further prospective studies in de novo PD are crucial to understand dysbiosis's role in disease progression.
Related Concept Videos
Parkinson's Disease: Overview
Dysbiosis of the Gut Microbiota
Gut-Brain Axis
Microbiota Modulation by Antibiotics
Parkinson Disease l: Introduction
Parkinson Disease ll: Pathophysiology

