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Utilizing the Public GenomeTrakr Database for Foodborne Pathogen Traceback.

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Become a GenomeTrakr data contributor to join an international genomic database for foodborne pathogens. Submit your isolate data to the National Center for Biotechnology Information (NCBI) for real-time surveillance and research.

Keywords:
Foodborne pathogensGenomeTrakrGenomicsSurveillanceTrackbackWGS

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Area of Science:

  • Microbiology
  • Genomics
  • Bioinformatics

Background:

  • GenomeTrakr is a global reference database for food and environmental pathogen genomic data.
  • Data is publicly accessible via the National Center for Biotechnology Information (NCBI).
  • NCBI's Pathogen Detection browser facilitates real-time phylogenetic analysis.

Purpose of the Study:

  • To provide a comprehensive protocol for contributing data to the GenomeTrakr database.
  • To enable researchers to integrate their findings into a global pathogen surveillance network.
  • To enhance the GenomeTrakr database with new genomic data.

Main Methods:

  • Detailed step-by-step protocol for data submission.
  • Utilizing the National Center for Biotechnology Information (NCBI) infrastructure for data housing and analysis.
  • Leveraging the Pathogen Detection browser for phylogenetic clustering.

Main Results:

  • Clear guidelines for GenomeTrakr data contribution.
  • Integration of new isolate data into existing phylogenetic clusters.
  • Real-time visualization of newly submitted isolates within global surveillance programs.

Conclusions:

  • The protocol facilitates seamless data contribution to GenomeTrakr.
  • Data contributors gain insights into pathogen relationships and surveillance.
  • Enhanced genomic data enriches the global understanding of foodborne pathogens.