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Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
A novel image segmentation method for the evaluation of inflammation-induced cortical and hippocampal white matter
Amin Mottahedin1, Xiaoli Zhang2, Aura Zelco1
1Department of Physiology, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Sweden.
Insights
A new automated method, MyelinQ, accurately quantifies white matter in neonatal mouse brains. This tool reveals that Poly I:C viral infection mimic causes hypomyelination in specific brain regions.
Area of Science:
- Neuroscience
- Developmental Biology
- Immunology
Background:
- Neonatal brain white matter injuries are linked to infection and inflammation, leading to long-term neurological issues.
- Quantifying white matter injury and myelinated axons in animal models is challenging due to limitations in current measurement methods.
Purpose of the Study:
- To develop and validate an automated segmentation method, MyelinQ, for quantifying myelinated white matter in neonatal mouse brain sections.
- To assess the impact of a viral infection mimic on white matter myelination in the neonatal mouse brain.
Main Methods:
- Development of MyelinQ, an automated segmentation software for analyzing immunohistochemical DAB-stained brain sections.
- Application of MyelinQ to neonatal mouse brains exposed to Poly I:C, a Toll-like receptor 3 ligand, to evaluate white matter hypomyelination.
- Comparison of MyelinQ results with a previously established quantification method.
Main Results:
- MyelinQ accurately quantifies myelinated white matter, yielding results comparable to existing methods.
- Poly I:C exposure resulted in significant hypomyelination in the cortical and hippocampal fimbria regions.
- No significant hypomyelination was observed in the striatal caudoputamen region following Poly I:C exposure.
Conclusions:
- MyelinQ offers an automated, objective, and accurate platform for quantifying myelin and evaluating white matter injuries in animal models.
- The study demonstrates MyelinQ's utility in identifying region-specific white matter alterations caused by infection mimics.
- MyelinQ provides a valuable tool for researchers studying neonatal brain development and injury.
Abstract:
The developing brain is very susceptible to environmental insults, and very immature infants often suffer from long-term neurological syndromes associated with white matter injuries such as periventricular leukomalacia. Infection and inflammation are important risk factors for neonatal brain white matter injuries, but the evaluation of white matter injury in animal models, especially the quantification of myelinated axons, has long been problematic due to the lack of ideal measurement methods. Here, we present an automated segmentation method, which we call MyelinQ, for the quantification of myelinated white matter in immunohistochemical DAB-stained sections of the neonatal mouse brain. Using MyelinQ, we show that a viral infection mimic agent, the Toll-like receptor 3 ligand Poly I:C, causes significant hypomyelination of white matter in the cortical and hippocampal fimbria regions, but not in the striatal caudoputamen region. We showed that MyelinQ can reliably produce results that are comparable to a method used in our previous publications. However, in comparison to the conventional method, MyelinQ has the advantages of being automated, objective and accurate. MyelinQ can analyze white matter in various specific brain regions and therefore provides a useful platform for the quantification of myelin and the evaluation of white matter injuries in animal models. MyelinQ and its code together with instructions for use can be found at: https://github.com/parham-ap/myelinq.
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