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Published on: July 22, 2020
MicroRNA-messenger RNA interactions involving JAK-STAT signaling genes in colorectal cancer
Lila E Mullany1, Jennifer S Herrick1, Lori C Sakoda2
1Department of Medicine, University of Utah, 383 Colorow, Salt Lake City, Utah.
Abstract:
JAK-STAT signaling influences many downstream processes that, unchecked, contribute to carcinogenesis and metastasis. MicroRNAs (miRNAs) are hypothesized as a mechanism to prevent uncontrolled growth from continuous JAK-STAT activation. We investigated differential expression between paired carcinoma and normal colorectal mucosa of messenger RNAs (mRNAs) and miRNAs using RNA-Seq and Agilent Human miRNA Microarray V19.0 data, respectively, using a negative binomial mixed effects model to test 122 JAK-STAT-signaling genes in 217 colorectal cancer (CRC) cases. Overall, 42 mRNAs were differentially expressed with a fold change of >1.50 or <0.67, remaining significant with a false discovery rate of < 0.05; four were dysregulated in microsatellite stable (MSS) tumors, eight were for microsatellite unstable (MSI)-specific tumors. Of these 54 mRNAs, 17 were associated with differential expression of 46 miRNAs, comprising 116 interactions: 16 were significant overall, one for MSS tumors only. Twenty of the 29 interactions with negative beta coefficients involved miRNA seed sequence matches with mRNAs, supporting miRNA-mediated mRNA repression; 17 of these mRNAs encode for receptor molecules. Receptor molecule degradation is an established JAK-STAT signaling control mechanism; our results suggest that miRNAs facilitate this process. Interactions involving positive beta coefficients may illustrate downstream effects of disrupted STAT activity, and subsequent miRNA upregulation.
Insights
MicroRNAs (miRNAs) may prevent uncontrolled growth in colorectal cancer (CRC) by regulating messenger RNAs (mRNAs) involved in JAK-STAT signaling. This study reveals novel miRNA-mRNA interactions potentially controlling cancer progression.
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- Janus kinase-Signal transducer and activator of transcription (JAK-STAT) signaling is crucial in cellular processes and implicated in cancer development.
- MicroRNAs (miRNAs) are regulators of gene expression, proposed to counteract uncontrolled cell growth driven by persistent JAK-STAT activation.
Purpose of the Study:
- To investigate the differential expression of messenger RNAs (mRNAs) and miRNAs in colorectal cancer (CRC) tissues compared to normal tissues.
- To identify specific JAK-STAT signaling pathway genes and their associated miRNAs in CRC.
- To explore the regulatory interactions between miRNAs and mRNAs within the JAK-STAT pathway in CRC.
Main Methods:
- RNA sequencing (RNA-Seq) was employed to analyze mRNA expression.
- Agilent Human miRNA Microarray V19.0 was used for miRNA expression profiling.
- A negative binomial mixed effects model was applied to analyze differential gene expression and miRNA-mRNA interactions in 217 CRC cases.
Main Results:
- 42 mRNAs showed significant differential expression between cancer and normal tissues.
- Four mRNAs were dysregulated in microsatellite stable (MSS) tumors, and eight in microsatellite unstable (MSI)-specific tumors.
- 17 significant miRNA-mRNA interactions were identified, with 116 total interactions analyzed, suggesting miRNAs mediate mRNA repression, particularly for receptor molecules involved in JAK-STAT signaling.
Conclusions:
- miRNAs likely play a role in controlling JAK-STAT signaling by facilitating the degradation of receptor molecules, a known regulatory mechanism.
- The identified miRNA-mRNA interactions provide insights into the molecular mechanisms underlying CRC development and progression.
- Further research into these interactions could reveal novel therapeutic targets for colorectal cancer.
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