Related Experiment Video
Updated: Jan 31, 2026

Fluorescence-Based Detection of FEN1 Nuclease Activity and Screening of Small-Molecule Inhibitors
Published on: June 27, 2025
The identification of novel small-molecule inhibitors targeting WDR5-MLL1 interaction through fluorescence
Xiaoqing Ye1, Rukang Zhang2, Fulin Lian2
1College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, China.
Abstract:
The protein-protein interaction between WDR5 (WD40 repeat protein 5) and MLL1 (mixed-lineage leukemia 1) is important for maintaining optimal H3K4 methyltransferase activity of MLL1. Dysregulation of MLL1 catalytic function is relevant to mixed-lineage leukemia, and targeting WDR5-MLL1 interaction could be a promising therapeutic strategy for leukemia harboring MLL1 fusion proteins. To date, several peptidomimetic and non-peptidomimetic small-molecule inhibitors targeting WDR5-MLL1 interaction have been reported, yet the discovery walk of new drugs inhibiting MLL1 methytransferase activity is still in its infancy. It's urgent to find other small-molecule WDR5-MLL1 inhibitors with novel scaffolds. In this study, through fluorescence polarization (FP)-based high throughput screening, several small-molecule inhibitors with potent inhibitory activities in vitro against WDR5-MLL1 interaction were discovered. Nuclear Magnetic Resonance (NMR) assays were carried out to confirm the direct binding between hit compounds and WDR5. Subsequent similarity-based analog searching of the 4 hits led to several inhibitors with better activity, among them, DC_M5_2 displayed highest inhibitory activity with IC50 values of 9.63 ± 1.46 µM. Furthermore, a molecular docking study was performed and disclosed the binding modes and interaction mechanisms between two most potent inhibitors and WDR5.
Insights
Researchers identified novel small molecules that inhibit the WDR5-MLL1 interaction, a key target for treating mixed-lineage leukemia. These compounds show potent activity and offer new therapeutic avenues for leukemia patients.
Area of Science:
- Biochemistry
- Medicinal Chemistry
- Oncology
Background:
- The WDR5-MLL1 protein-protein interaction is crucial for MLL1's H3K4 methyltransferase activity.
- Dysregulation of MLL1 is implicated in mixed-lineage leukemia, making the WDR5-MLL1 interaction a potential therapeutic target.
- Existing small-molecule inhibitors of this interaction are limited, necessitating the discovery of novel compounds.
Purpose of the Study:
- To discover novel small-molecule inhibitors targeting the WDR5-MLL1 interaction.
- To identify compounds with potent in vitro inhibitory activity against WDR5-MLL1 interaction.
- To explore new scaffolds for developing MLL1-targeting leukemia therapies.
Main Methods:
- High-throughput screening using fluorescence polarization (FP) assays.
- Nuclear Magnetic Resonance (NMR) spectroscopy to confirm direct compound binding to WDR5.
- Similarity-based analog searching and molecular docking studies.
Main Results:
- Several small molecules with potent in vitro inhibitory activity against the WDR5-MLL1 interaction were identified.
- NMR confirmed direct binding of hit compounds to WDR5.
- DC_M5_2 demonstrated the highest inhibitory activity with an IC50 of 9.63 ± 1.46 µM, and docking studies elucidated binding modes.
Conclusions:
- Novel small-molecule inhibitors of the WDR5-MLL1 interaction were successfully discovered through high-throughput screening.
- These compounds, particularly DC_M5_2, represent promising leads for developing new therapeutic strategies against MLL1-driven leukemias.
- Further investigation into these novel scaffolds could advance the development of MLL1 inhibitors for leukemia treatment.
Related Concept Videos
Molecular Shape and Polarity
Group Polarization
Eukaryotic Transcription Inhibitors
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Molecules and Compounds
Polar Coordinates
Polarity of the Cytoskeleton

