Related Experiment Video
Updated: Jan 30, 2026

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
Molecular dynamics simulations of EPON-862/DETDA epoxy networks: structure, topology, elastic constants, and local
Spyros V Kallivokas1, Aristotelis P Sgouros1, Doros N Theodorou1
1School of Chemical Engineering, Department of Materials Science and Engineering, National Technical University of Athens (NTUA), GR-15780 Athens, Greece. doros@chemeng.ntua.gr.
Abstract:
Structural, topological, mechanical and dynamical properties of EPON-862/DETDA epoxy networks are investigated with Molecular Dynamics (MD) simulations. The epoxy networks are composed of the resin Diglycidyl Ether Bisphenol F (DGEBF), also known as EPON-862, and the hardener Diethyl Toluene Diamine (DETDA). Systems with four different crosslinking degrees are examined; the effect of the degree of crosslinking on studied properties is thus determined. The computed quantities are retrieved by employing several simulation strategies and numerical methods of statistical mechanics in order to gain a rigorous and solid understanding of the aforementioned properties as well as to assess the accuracy and applicability of the methods employed. We quantify and analyze the local structure of the EPON-862/DETDA epoxy networks through the partial pair distribution functions, the Faber-Ziman partial structure factors and through simulated X-ray diffraction patterns, demonstrating good agreement with an experimental spectrum from a similar epoxy resin. The topology of the networks is examined with the aim of assessing percolation of connectivity, the properties of network fragments (subnetworks), and the distribution of functionalities of the crosslinks. The elastic constants of the systems are retrieved by employing two equilibrium (analysis of volume fluctuations, Parrinello-Rahman strain fluctuation relation) and one nonequilibrium (uniaxial tension/compression deformations at prescribed rate) method. Finally, the glass temperatures of the systems are estimated by calculating the density as a function of temperature and by analyzing the reorientational dynamics of bond vectors which describe relaxation processes at the segment level.
Related Concept Videos
Dynamic Modulus of Elasticity of Concrete
The sonic test is a common method to determine the dynamic modulus. In this test, a concrete beam, sized either 6 x 6 x 30 inches or 4 x 4 x 20 inches, is clamped at its center. Vibrations are initiated at one end of the beam by an electromagnetic exciter unit powered by a...
Dynamic Equilibrium
Molecular Structure and Acidity
The size effect explains the change in atomic size on acidity. When comparing the acids formed from elements that belong to the same column in the periodic table, their atomic sizes...
Equation of Rotational Dynamics
Dynamics of Circular Motion
Any acceleration must be produced by some force. Therefore, any force or combination of forces can cause centripetal acceleration. A few examples include the tension in the rope on a...
Fermi Level Dynamics
Electron affinity in semiconductors refers to the energy gap between the minimum of its conduction band and the vacuum level and it is a critical parameter in determining how easily a semiconductor can accept additional electrons.
The work...

